Job ID = 2001545 sra ファイルのダウンロード中... Read layout: SINGLE fastq に変換中... 2019-07-04T19:33:49 fasterq-dump.2.9.6 sys: timeout exhausted while reading file within network system module - mbedtls_ssl_read returned -76 ( NET - Reading information from the socket failed ) 2019-07-04T19:42:55 fasterq-dump.2.9.6 sys: timeout exhausted while reading file within network system module - mbedtls_ssl_read returned -76 ( NET - Reading information from the socket failed ) 2019-07-04T19:56:01 fasterq-dump.2.9.6 sys: timeout exhausted while reading file within network system module - mbedtls_ssl_read returned -76 ( NET - Reading information from the socket failed ) 2019-07-04T19:58:31 fasterq-dump.2.9.6 sys: error unknown while reading file within network system module - mbedtls_ssl_read returned -76 ( NET - Reading information from the socket failed ) 2019-07-04T20:03:47 fasterq-dump.2.9.6 sys: timeout exhausted while reading file within network system module - mbedtls_ssl_read returned -76 ( NET - Reading information from the socket failed ) 2019-07-04T20:03:47 fasterq-dump.2.9.6 sys: timeout exhausted while reading file within network system module - mbedtls_ssl_read returned -76 ( NET - Reading information from the socket failed ) 2019-07-04T20:03:47 fasterq-dump.2.9.6 sys: timeout exhausted while reading file within network system module - mbedtls_ssl_read returned -76 ( NET - Reading information from the socket failed ) 2019-07-04T20:03:47 fasterq-dump.2.9.6 sys: timeout exhausted while reading file within network system module - mbedtls_ssl_read returned -76 ( NET - Reading information from the socket failed ) 2019-07-04T20:08:11 fasterq-dump.2.9.6 sys: timeout exhausted while reading file within network system module - mbedtls_ssl_read returned -76 ( NET - Reading information from the socket failed ) 2019-07-04T20:15:10 fasterq-dump.2.9.6 sys: timeout exhausted while reading file within network system module - mbedtls_ssl_read returned -76 ( NET - Reading information from the socket failed ) spots read : 97,046,485 reads read : 97,046,485 reads written : 97,046,485 rm: cannot remove ‘[DSE]RR*’: No such file or directory fastq に変換しました。 bowtie でマッピング中... Time loading reference: 00:00:01 Time loading forward index: 00:00:01 Time loading mirror index: 00:00:01 Multiseed full-index search: 01:19:01 97046485 reads; of these: 97046485 (100.00%) were unpaired; of these: 1679893 (1.73%) aligned 0 times 80553068 (83.00%) aligned exactly 1 time 14813524 (15.26%) aligned >1 times 98.27% overall alignment rate Time searching: 01:19:04 Overall time: 01:19:04 マッピングが完了しました。 samtools でBAM に変換中... [samopen] SAM header is present: 953 sequences. [bam_sort_core] merging from 40 files... [bam_rmdupse_core] 22187935 / 95366592 = 0.2327 in library ' ' BAM に変換しました。 Bed ファイルを作成中... BedGraph に変換中... INFO @ Fri, 05 Jul 2019 07:05:08: # Command line: callpeak -t /home/okishinya/chipatlas/results/rn6/ERX101888/ERX101888.bam -f BAM -g 2.15e9 -n /home/okishinya/chipatlas/results/rn6/ERX101888/ERX101888.05 -q 1e-05 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/rn6/ERX101888/ERX101888.05 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/rn6/ERX101888/ERX101888.bam'] # control file = None # effective genome size = 2.15e+09 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-05 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Fri, 05 Jul 2019 07:05:08: #1 read tag files... INFO @ Fri, 05 Jul 2019 07:05:08: #1 read treatment tags... INFO @ Fri, 05 Jul 2019 07:05:09: # Command line: callpeak -t /home/okishinya/chipatlas/results/rn6/ERX101888/ERX101888.bam -f BAM -g 2.15e9 -n /home/okishinya/chipatlas/results/rn6/ERX101888/ERX101888.10 -q 1e-10 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/rn6/ERX101888/ERX101888.10 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/rn6/ERX101888/ERX101888.bam'] # control file = None # effective genome size = 2.15e+09 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-10 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Fri, 05 Jul 2019 07:05:09: #1 read tag files... INFO @ Fri, 05 Jul 2019 07:05:09: #1 read treatment tags... INFO @ Fri, 05 Jul 2019 07:05:10: # Command line: callpeak -t /home/okishinya/chipatlas/results/rn6/ERX101888/ERX101888.bam -f BAM -g 2.15e9 -n /home/okishinya/chipatlas/results/rn6/ERX101888/ERX101888.20 -q 1e-20 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/rn6/ERX101888/ERX101888.20 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/rn6/ERX101888/ERX101888.bam'] # control file = None # effective genome size = 2.15e+09 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-20 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Fri, 05 Jul 2019 07:05:10: #1 read tag files... INFO @ Fri, 05 Jul 2019 07:05:10: #1 read treatment tags... INFO @ Fri, 05 Jul 2019 07:05:18: 1000000 INFO @ Fri, 05 Jul 2019 07:05:19: 1000000 INFO @ Fri, 05 Jul 2019 07:05:21: 1000000 INFO @ Fri, 05 Jul 2019 07:05:27: 2000000 INFO @ Fri, 05 Jul 2019 07:05:31: 2000000 INFO @ Fri, 05 Jul 2019 07:05:33: 2000000 INFO @ Fri, 05 Jul 2019 07:05:36: 3000000 INFO @ Fri, 05 Jul 2019 07:05:43: 3000000 INFO @ Fri, 05 Jul 2019 07:05:45: 3000000 INFO @ Fri, 05 Jul 2019 07:05:45: 4000000 INFO @ Fri, 05 Jul 2019 07:05:54: 5000000 INFO @ Fri, 05 Jul 2019 07:05:54: 4000000 INFO @ Fri, 05 Jul 2019 07:05:56: 4000000 INFO @ Fri, 05 Jul 2019 07:06:02: 6000000 INFO @ Fri, 05 Jul 2019 07:06:06: 5000000 INFO @ Fri, 05 Jul 2019 07:06:08: 5000000 INFO @ Fri, 05 Jul 2019 07:06:11: 7000000 INFO @ Fri, 05 Jul 2019 07:06:17: 6000000 INFO @ Fri, 05 Jul 2019 07:06:19: 6000000 INFO @ Fri, 05 Jul 2019 07:06:19: 8000000 INFO @ Fri, 05 Jul 2019 07:06:28: 9000000 INFO @ Fri, 05 Jul 2019 07:06:29: 7000000 INFO @ Fri, 05 Jul 2019 07:06:31: 7000000 INFO @ Fri, 05 Jul 2019 07:06:37: 10000000 INFO @ Fri, 05 Jul 2019 07:06:40: 8000000 INFO @ Fri, 05 Jul 2019 07:06:42: 8000000 INFO @ Fri, 05 Jul 2019 07:06:46: 11000000 INFO @ Fri, 05 Jul 2019 07:06:52: 9000000 INFO @ Fri, 05 Jul 2019 07:06:54: 9000000 INFO @ Fri, 05 Jul 2019 07:06:55: 12000000 INFO @ Fri, 05 Jul 2019 07:07:03: 13000000 INFO @ Fri, 05 Jul 2019 07:07:03: 10000000 INFO @ Fri, 05 Jul 2019 07:07:05: 10000000 INFO @ Fri, 05 Jul 2019 07:07:12: 14000000 INFO @ Fri, 05 Jul 2019 07:07:15: 11000000 INFO @ Fri, 05 Jul 2019 07:07:17: 11000000 INFO @ Fri, 05 Jul 2019 07:07:21: 15000000 INFO @ Fri, 05 Jul 2019 07:07:27: 12000000 INFO @ Fri, 05 Jul 2019 07:07:28: 12000000 INFO @ Fri, 05 Jul 2019 07:07:30: 16000000 INFO @ Fri, 05 Jul 2019 07:07:38: 13000000 INFO @ Fri, 05 Jul 2019 07:07:39: 17000000 INFO @ Fri, 05 Jul 2019 07:07:40: 13000000 INFO @ Fri, 05 Jul 2019 07:07:47: 18000000 INFO @ Fri, 05 Jul 2019 07:07:50: 14000000 INFO @ Fri, 05 Jul 2019 07:07:52: 14000000 INFO @ Fri, 05 Jul 2019 07:07:55: 19000000 INFO @ Fri, 05 Jul 2019 07:08:02: 15000000 INFO @ Fri, 05 Jul 2019 07:08:03: 15000000 INFO @ Fri, 05 Jul 2019 07:08:03: 20000000 INFO @ Fri, 05 Jul 2019 07:08:12: 21000000 INFO @ Fri, 05 Jul 2019 07:08:13: 16000000 INFO @ Fri, 05 Jul 2019 07:08:15: 16000000 INFO @ Fri, 05 Jul 2019 07:08:21: 22000000 INFO @ Fri, 05 Jul 2019 07:08:25: 17000000 INFO @ Fri, 05 Jul 2019 07:08:27: 17000000 INFO @ Fri, 05 Jul 2019 07:08:33: 23000000 INFO @ Fri, 05 Jul 2019 07:08:39: 18000000 INFO @ Fri, 05 Jul 2019 07:08:40: 18000000 INFO @ Fri, 05 Jul 2019 07:08:45: 24000000 INFO @ Fri, 05 Jul 2019 07:08:51: 19000000 INFO @ Fri, 05 Jul 2019 07:08:52: 19000000 INFO @ Fri, 05 Jul 2019 07:08:56: 25000000 INFO @ Fri, 05 Jul 2019 07:09:03: 20000000 INFO @ Fri, 05 Jul 2019 07:09:04: 20000000 INFO @ Fri, 05 Jul 2019 07:09:07: 26000000 INFO @ Fri, 05 Jul 2019 07:09:13: 21000000 INFO @ Fri, 05 Jul 2019 07:09:17: 21000000 INFO @ Fri, 05 Jul 2019 07:09:19: 27000000 INFO @ Fri, 05 Jul 2019 07:09:24: 22000000 INFO @ Fri, 05 Jul 2019 07:09:30: 22000000 INFO @ Fri, 05 Jul 2019 07:09:32: 28000000 INFO @ Fri, 05 Jul 2019 07:09:35: 23000000 INFO @ Fri, 05 Jul 2019 07:09:41: 23000000 INFO @ Fri, 05 Jul 2019 07:09:44: 29000000 INFO @ Fri, 05 Jul 2019 07:09:48: 24000000 INFO @ Fri, 05 Jul 2019 07:09:55: 24000000 INFO @ Fri, 05 Jul 2019 07:09:56: 30000000 INFO @ Fri, 05 Jul 2019 07:10:00: 25000000 INFO @ Fri, 05 Jul 2019 07:10:06: 25000000 INFO @ Fri, 05 Jul 2019 07:10:08: 31000000 INFO @ Fri, 05 Jul 2019 07:10:11: 26000000 INFO @ Fri, 05 Jul 2019 07:10:17: 26000000 INFO @ Fri, 05 Jul 2019 07:10:19: 32000000 INFO @ Fri, 05 Jul 2019 07:10:22: 27000000 INFO @ Fri, 05 Jul 2019 07:10:30: 33000000 INFO @ Fri, 05 Jul 2019 07:10:31: 27000000 INFO @ Fri, 05 Jul 2019 07:10:34: 28000000 INFO @ Fri, 05 Jul 2019 07:10:41: 34000000 INFO @ Fri, 05 Jul 2019 07:10:42: 28000000 INFO @ Fri, 05 Jul 2019 07:10:46: 29000000 INFO @ Fri, 05 Jul 2019 07:10:53: 35000000 INFO @ Fri, 05 Jul 2019 07:10:55: 29000000 INFO @ Fri, 05 Jul 2019 07:10:57: 30000000 INFO @ Fri, 05 Jul 2019 07:11:04: 36000000 INFO @ Fri, 05 Jul 2019 07:11:06: 30000000 INFO @ Fri, 05 Jul 2019 07:11:09: 31000000 INFO @ Fri, 05 Jul 2019 07:11:16: 37000000 INFO @ Fri, 05 Jul 2019 07:11:17: 31000000 INFO @ Fri, 05 Jul 2019 07:11:21: 32000000 INFO @ Fri, 05 Jul 2019 07:11:28: 38000000 INFO @ Fri, 05 Jul 2019 07:11:29: 32000000 INFO @ Fri, 05 Jul 2019 07:11:33: 33000000 INFO @ Fri, 05 Jul 2019 07:11:40: 33000000 INFO @ Fri, 05 Jul 2019 07:11:40: 39000000 INFO @ Fri, 05 Jul 2019 07:11:46: 34000000 INFO @ Fri, 05 Jul 2019 07:11:51: 40000000 INFO @ Fri, 05 Jul 2019 07:11:52: 34000000 INFO @ Fri, 05 Jul 2019 07:11:58: 35000000 INFO @ Fri, 05 Jul 2019 07:12:03: 41000000 INFO @ Fri, 05 Jul 2019 07:12:06: 35000000 INFO @ Fri, 05 Jul 2019 07:12:10: 36000000 INFO @ Fri, 05 Jul 2019 07:12:13: 42000000 INFO @ Fri, 05 Jul 2019 07:12:18: 36000000 INFO @ Fri, 05 Jul 2019 07:12:24: 37000000 INFO @ Fri, 05 Jul 2019 07:12:24: 43000000 INFO @ Fri, 05 Jul 2019 07:12:31: 37000000 INFO @ Fri, 05 Jul 2019 07:12:35: 44000000 INFO @ Fri, 05 Jul 2019 07:12:36: 38000000 INFO @ Fri, 05 Jul 2019 07:12:45: 38000000 INFO @ Fri, 05 Jul 2019 07:12:47: 45000000 INFO @ Fri, 05 Jul 2019 07:12:48: 39000000 INFO @ Fri, 05 Jul 2019 07:12:58: 46000000 INFO @ Fri, 05 Jul 2019 07:12:58: 39000000 INFO @ Fri, 05 Jul 2019 07:13:00: 40000000 INFO @ Fri, 05 Jul 2019 07:13:09: 47000000 INFO @ Fri, 05 Jul 2019 07:13:10: 40000000 INFO @ Fri, 05 Jul 2019 07:13:12: 41000000 INFO @ Fri, 05 Jul 2019 07:13:21: 41000000 INFO @ Fri, 05 Jul 2019 07:13:22: 48000000 INFO @ Fri, 05 Jul 2019 07:13:24: 42000000 INFO @ Fri, 05 Jul 2019 07:13:32: 49000000 INFO @ Fri, 05 Jul 2019 07:13:33: 42000000 INFO @ Fri, 05 Jul 2019 07:13:38: 43000000 INFO @ Fri, 05 Jul 2019 07:13:42: 50000000 INFO @ Fri, 05 Jul 2019 07:13:43: 43000000 INFO @ Fri, 05 Jul 2019 07:13:51: 51000000 INFO @ Fri, 05 Jul 2019 07:13:52: 44000000 INFO @ Fri, 05 Jul 2019 07:13:55: 44000000 INFO @ Fri, 05 Jul 2019 07:14:02: 52000000 INFO @ Fri, 05 Jul 2019 07:14:05: 45000000 INFO @ Fri, 05 Jul 2019 07:14:06: 45000000 INFO @ Fri, 05 Jul 2019 07:14:11: 53000000 INFO @ Fri, 05 Jul 2019 07:14:17: 46000000 INFO @ Fri, 05 Jul 2019 07:14:18: 46000000 INFO @ Fri, 05 Jul 2019 07:14:22: 54000000 INFO @ Fri, 05 Jul 2019 07:14:27: 47000000 INFO @ Fri, 05 Jul 2019 07:14:30: 47000000 INFO @ Fri, 05 Jul 2019 07:14:32: 55000000 INFO @ Fri, 05 Jul 2019 07:14:38: 48000000 INFO @ Fri, 05 Jul 2019 07:14:41: 48000000 INFO @ Fri, 05 Jul 2019 07:14:42: 56000000 INFO @ Fri, 05 Jul 2019 07:14:49: 49000000 INFO @ Fri, 05 Jul 2019 07:14:52: 57000000 INFO @ Fri, 05 Jul 2019 07:14:55: 49000000 INFO @ Fri, 05 Jul 2019 07:15:01: 50000000 INFO @ Fri, 05 Jul 2019 07:15:03: 58000000 INFO @ Fri, 05 Jul 2019 07:15:06: 50000000 INFO @ Fri, 05 Jul 2019 07:15:12: 51000000 INFO @ Fri, 05 Jul 2019 07:15:14: 59000000 INFO @ Fri, 05 Jul 2019 07:15:18: 51000000 INFO @ Fri, 05 Jul 2019 07:15:23: 52000000 INFO @ Fri, 05 Jul 2019 07:15:23: 60000000 INFO @ Fri, 05 Jul 2019 07:15:30: 52000000 INFO @ Fri, 05 Jul 2019 07:15:31: 61000000 INFO @ Fri, 05 Jul 2019 07:15:34: 53000000 INFO @ Fri, 05 Jul 2019 07:15:40: 62000000 INFO @ Fri, 05 Jul 2019 07:15:42: 53000000 INFO @ Fri, 05 Jul 2019 07:15:46: 54000000 INFO @ Fri, 05 Jul 2019 07:15:49: 63000000 INFO @ Fri, 05 Jul 2019 07:15:54: 54000000 INFO @ Fri, 05 Jul 2019 07:15:57: 64000000 INFO @ Fri, 05 Jul 2019 07:15:58: 55000000 INFO @ Fri, 05 Jul 2019 07:16:06: 55000000 INFO @ Fri, 05 Jul 2019 07:16:06: 65000000 INFO @ Fri, 05 Jul 2019 07:16:09: 56000000 INFO @ Fri, 05 Jul 2019 07:16:18: 66000000 INFO @ Fri, 05 Jul 2019 07:16:18: 56000000 INFO @ Fri, 05 Jul 2019 07:16:20: 57000000 INFO @ Fri, 05 Jul 2019 07:16:28: 67000000 INFO @ Fri, 05 Jul 2019 07:16:30: 57000000 INFO @ Fri, 05 Jul 2019 07:16:31: 58000000 INFO @ Fri, 05 Jul 2019 07:16:39: 68000000 INFO @ Fri, 05 Jul 2019 07:16:42: 59000000 INFO @ Fri, 05 Jul 2019 07:16:42: 58000000 INFO @ Fri, 05 Jul 2019 07:16:50: 69000000 INFO @ Fri, 05 Jul 2019 07:16:52: 60000000 INFO @ Fri, 05 Jul 2019 07:16:52: 59000000 INFO @ Fri, 05 Jul 2019 07:17:00: 70000000 INFO @ Fri, 05 Jul 2019 07:17:02: 60000000 INFO @ Fri, 05 Jul 2019 07:17:03: 61000000 INFO @ Fri, 05 Jul 2019 07:17:10: 71000000 INFO @ Fri, 05 Jul 2019 07:17:12: 61000000 INFO @ Fri, 05 Jul 2019 07:17:14: 62000000 INFO @ Fri, 05 Jul 2019 07:17:19: 72000000 INFO @ Fri, 05 Jul 2019 07:17:22: 62000000 INFO @ Fri, 05 Jul 2019 07:17:24: 63000000 INFO @ Fri, 05 Jul 2019 07:17:28: 73000000 INFO @ Fri, 05 Jul 2019 07:17:31: #1 tag size is determined as 50 bps INFO @ Fri, 05 Jul 2019 07:17:31: #1 tag size = 50 INFO @ Fri, 05 Jul 2019 07:17:31: #1 total tags in treatment: 73178657 INFO @ Fri, 05 Jul 2019 07:17:31: #1 user defined the maximum tags... INFO @ Fri, 05 Jul 2019 07:17:31: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Fri, 05 Jul 2019 07:17:32: 63000000 INFO @ Fri, 05 Jul 2019 07:17:33: #1 tags after filtering in treatment: 73178555 INFO @ Fri, 05 Jul 2019 07:17:33: #1 Redundant rate of treatment: 0.00 INFO @ Fri, 05 Jul 2019 07:17:33: #1 finished! INFO @ Fri, 05 Jul 2019 07:17:33: #2 Build Peak Model... INFO @ Fri, 05 Jul 2019 07:17:33: #2 looking for paired plus/minus strand peaks... INFO @ Fri, 05 Jul 2019 07:17:35: 64000000 INFO @ Fri, 05 Jul 2019 07:17:42: 64000000 INFO @ Fri, 05 Jul 2019 07:17:45: 65000000 INFO @ Fri, 05 Jul 2019 07:17:50: #2 number of paired peaks: 130587 INFO @ Fri, 05 Jul 2019 07:17:50: start model_add_line... INFO @ Fri, 05 Jul 2019 07:17:51: start X-correlation... INFO @ Fri, 05 Jul 2019 07:17:51: end of X-cor INFO @ Fri, 05 Jul 2019 07:17:51: #2 finished! INFO @ Fri, 05 Jul 2019 07:17:51: #2 predicted fragment length is 137 bps INFO @ Fri, 05 Jul 2019 07:17:51: #2 alternative fragment length(s) may be 4,137 bps INFO @ Fri, 05 Jul 2019 07:17:51: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/rn6/ERX101888/ERX101888.10_model.r INFO @ Fri, 05 Jul 2019 07:17:51: #3 Call peaks... INFO @ Fri, 05 Jul 2019 07:17:51: #3 Pre-compute pvalue-qvalue table... INFO @ Fri, 05 Jul 2019 07:17:53: 65000000 INFO @ Fri, 05 Jul 2019 07:17:56: 66000000 INFO @ Fri, 05 Jul 2019 07:18:03: 66000000 INFO @ Fri, 05 Jul 2019 07:18:07: 67000000 INFO @ Fri, 05 Jul 2019 07:18:12: 67000000 INFO @ Fri, 05 Jul 2019 07:18:18: 68000000 INFO @ Fri, 05 Jul 2019 07:18:22: 68000000 INFO @ Fri, 05 Jul 2019 07:18:28: 69000000 INFO @ Fri, 05 Jul 2019 07:18:31: 69000000 INFO @ Fri, 05 Jul 2019 07:18:39: 70000000 INFO @ Fri, 05 Jul 2019 07:18:41: 70000000 INFO @ Fri, 05 Jul 2019 07:18:50: 71000000 INFO @ Fri, 05 Jul 2019 07:18:51: 71000000 INFO @ Fri, 05 Jul 2019 07:19:01: 72000000 INFO @ Fri, 05 Jul 2019 07:19:02: 72000000 INFO @ Fri, 05 Jul 2019 07:19:12: 73000000 INFO @ Fri, 05 Jul 2019 07:19:12: 73000000 INFO @ Fri, 05 Jul 2019 07:19:15: #1 tag size is determined as 50 bps INFO @ Fri, 05 Jul 2019 07:19:15: #1 tag size = 50 INFO @ Fri, 05 Jul 2019 07:19:15: #1 total tags in treatment: 73178657 INFO @ Fri, 05 Jul 2019 07:19:15: #1 user defined the maximum tags... INFO @ Fri, 05 Jul 2019 07:19:15: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Fri, 05 Jul 2019 07:19:16: #1 tag size is determined as 50 bps INFO @ Fri, 05 Jul 2019 07:19:16: #1 tag size = 50 INFO @ Fri, 05 Jul 2019 07:19:16: #1 total tags in treatment: 73178657 INFO @ Fri, 05 Jul 2019 07:19:16: #1 user defined the maximum tags... INFO @ Fri, 05 Jul 2019 07:19:16: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Fri, 05 Jul 2019 07:19:17: #1 tags after filtering in treatment: 73178555 INFO @ Fri, 05 Jul 2019 07:19:17: #1 Redundant rate of treatment: 0.00 INFO @ Fri, 05 Jul 2019 07:19:17: #1 finished! INFO @ Fri, 05 Jul 2019 07:19:17: #2 Build Peak Model... INFO @ Fri, 05 Jul 2019 07:19:17: #2 looking for paired plus/minus strand peaks... INFO @ Fri, 05 Jul 2019 07:19:17: #1 tags after filtering in treatment: 73178555 INFO @ Fri, 05 Jul 2019 07:19:17: #1 Redundant rate of treatment: 0.00 INFO @ Fri, 05 Jul 2019 07:19:17: #1 finished! INFO @ Fri, 05 Jul 2019 07:19:17: #2 Build Peak Model... INFO @ Fri, 05 Jul 2019 07:19:17: #2 looking for paired plus/minus strand peaks... INFO @ Fri, 05 Jul 2019 07:19:34: #2 number of paired peaks: 130587 INFO @ Fri, 05 Jul 2019 07:19:34: start model_add_line... INFO @ Fri, 05 Jul 2019 07:19:35: start X-correlation... INFO @ Fri, 05 Jul 2019 07:19:35: end of X-cor INFO @ Fri, 05 Jul 2019 07:19:35: #2 finished! INFO @ Fri, 05 Jul 2019 07:19:35: #2 predicted fragment length is 137 bps INFO @ Fri, 05 Jul 2019 07:19:35: #2 alternative fragment length(s) may be 4,137 bps INFO @ Fri, 05 Jul 2019 07:19:35: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/rn6/ERX101888/ERX101888.20_model.r INFO @ Fri, 05 Jul 2019 07:19:35: #2 number of paired peaks: 130587 INFO @ Fri, 05 Jul 2019 07:19:35: start model_add_line... INFO @ Fri, 05 Jul 2019 07:19:37: #3 Call peaks... INFO @ Fri, 05 Jul 2019 07:19:37: #3 Pre-compute pvalue-qvalue table... INFO @ Fri, 05 Jul 2019 07:19:37: start X-correlation... INFO @ Fri, 05 Jul 2019 07:19:37: end of X-cor INFO @ Fri, 05 Jul 2019 07:19:37: #2 finished! INFO @ Fri, 05 Jul 2019 07:19:37: #2 predicted fragment length is 137 bps INFO @ Fri, 05 Jul 2019 07:19:37: #2 alternative fragment length(s) may be 4,137 bps INFO @ Fri, 05 Jul 2019 07:19:37: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/rn6/ERX101888/ERX101888.05_model.r INFO @ Fri, 05 Jul 2019 07:19:37: #3 Call peaks... INFO @ Fri, 05 Jul 2019 07:19:37: #3 Pre-compute pvalue-qvalue table... INFO @ Fri, 05 Jul 2019 07:22:07: #3 Call peaks for each chromosome... INFO @ Fri, 05 Jul 2019 07:23:45: #3 Call peaks for each chromosome... INFO @ Fri, 05 Jul 2019 07:23:56: #3 Call peaks for each chromosome... INFO @ Fri, 05 Jul 2019 07:24:21: #4 Write output xls file... /home/okishinya/chipatlas/results/rn6/ERX101888/ERX101888.10_peaks.xls INFO @ Fri, 05 Jul 2019 07:24:21: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/rn6/ERX101888/ERX101888.10_peaks.narrowPeak INFO @ Fri, 05 Jul 2019 07:24:21: #4 Write summits bed file... /home/okishinya/chipatlas/results/rn6/ERX101888/ERX101888.10_summits.bed INFO @ Fri, 05 Jul 2019 07:24:22: Done! pass1 - making usageList (61 chroms): 3 millis pass2 - checking and writing primary data (3570 records, 4 fields): 14 millis CompletedMACS2peakCalling INFO @ Fri, 05 Jul 2019 07:26:03: #4 Write output xls file... /home/okishinya/chipatlas/results/rn6/ERX101888/ERX101888.05_peaks.xls INFO @ Fri, 05 Jul 2019 07:26:03: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/rn6/ERX101888/ERX101888.05_peaks.narrowPeak INFO @ Fri, 05 Jul 2019 07:26:03: #4 Write summits bed file... /home/okishinya/chipatlas/results/rn6/ERX101888/ERX101888.05_summits.bed INFO @ Fri, 05 Jul 2019 07:26:03: Done! pass1 - making usageList (126 chroms): 9 millis pass2 - checking and writing primary data (24620 records, 4 fields): 42 millis CompletedMACS2peakCalling INFO @ Fri, 05 Jul 2019 07:26:19: #4 Write output xls file... /home/okishinya/chipatlas/results/rn6/ERX101888/ERX101888.20_peaks.xls INFO @ Fri, 05 Jul 2019 07:26:19: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/rn6/ERX101888/ERX101888.20_peaks.narrowPeak INFO @ Fri, 05 Jul 2019 07:26:19: #4 Write summits bed file... /home/okishinya/chipatlas/results/rn6/ERX101888/ERX101888.20_summits.bed INFO @ Fri, 05 Jul 2019 07:26:19: Done! pass1 - making usageList (32 chroms): 1 millis pass2 - checking and writing primary data (292 records, 4 fields): 4 millis CompletedMACS2peakCalling BedGraph に変換しました。 BigWig に変換中... BigWig に変換しました。