Job ID = 2001542 sra ファイルのダウンロード中... Read layout: SINGLE fastq に変換中... 2019-07-04T19:31:48 fasterq-dump.2.9.6 sys: timeout exhausted while reading file within network system module - mbedtls_ssl_read returned -76 ( NET - Reading information from the socket failed ) spots read : 191,433,238 reads read : 191,433,238 reads written : 191,433,238 rm: cannot remove ‘[DSE]RR*’: No such file or directory rm: cannot remove ‘/home/okishinya/ncbi/public/sra/ERR125690.sra.cache’: No such file or directory fastq に変換しました。 bowtie でマッピング中... Time loading reference: 00:00:00 Time loading forward index: 00:00:01 Time loading mirror index: 00:00:00 Multiseed full-index search: 03:11:31 191433238 reads; of these: 191433238 (100.00%) were unpaired; of these: 4712682 (2.46%) aligned 0 times 134245890 (70.13%) aligned exactly 1 time 52474666 (27.41%) aligned >1 times 97.54% overall alignment rate Time searching: 03:11:33 Overall time: 03:11:33 マッピングが完了しました。 samtools でBAM に変換中... [samopen] SAM header is present: 953 sequences. [bam_sort_core] merging from 80 files... [bam_rmdupse_core] 29422529 / 186720556 = 0.1576 in library ' ' BAM に変換しました。 Bed ファイルを作成中... BedGraph に変換中... INFO @ Fri, 05 Jul 2019 08:49:10: # Command line: callpeak -t /home/okishinya/chipatlas/results/rn6/ERX101885/ERX101885.bam -f BAM -g 2.15e9 -n /home/okishinya/chipatlas/results/rn6/ERX101885/ERX101885.05 -q 1e-05 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/rn6/ERX101885/ERX101885.05 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/rn6/ERX101885/ERX101885.bam'] # control file = None # effective genome size = 2.15e+09 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-05 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Fri, 05 Jul 2019 08:49:10: #1 read tag files... INFO @ Fri, 05 Jul 2019 08:49:10: #1 read treatment tags... INFO @ Fri, 05 Jul 2019 08:49:11: # Command line: callpeak -t /home/okishinya/chipatlas/results/rn6/ERX101885/ERX101885.bam -f BAM -g 2.15e9 -n /home/okishinya/chipatlas/results/rn6/ERX101885/ERX101885.10 -q 1e-10 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/rn6/ERX101885/ERX101885.10 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/rn6/ERX101885/ERX101885.bam'] # control file = None # effective genome size = 2.15e+09 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-10 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Fri, 05 Jul 2019 08:49:11: #1 read tag files... INFO @ Fri, 05 Jul 2019 08:49:11: #1 read treatment tags... INFO @ Fri, 05 Jul 2019 08:49:12: # Command line: callpeak -t /home/okishinya/chipatlas/results/rn6/ERX101885/ERX101885.bam -f BAM -g 2.15e9 -n /home/okishinya/chipatlas/results/rn6/ERX101885/ERX101885.20 -q 1e-20 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/rn6/ERX101885/ERX101885.20 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/rn6/ERX101885/ERX101885.bam'] # control file = None # effective genome size = 2.15e+09 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-20 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Fri, 05 Jul 2019 08:49:12: #1 read tag files... INFO @ Fri, 05 Jul 2019 08:49:12: #1 read treatment tags... INFO @ Fri, 05 Jul 2019 08:49:19: 1000000 INFO @ Fri, 05 Jul 2019 08:49:19: 1000000 INFO @ Fri, 05 Jul 2019 08:49:21: 1000000 INFO @ Fri, 05 Jul 2019 08:49:27: 2000000 INFO @ Fri, 05 Jul 2019 08:49:28: 2000000 INFO @ Fri, 05 Jul 2019 08:49:31: 2000000 INFO @ Fri, 05 Jul 2019 08:49:36: 3000000 INFO @ Fri, 05 Jul 2019 08:49:36: 3000000 INFO @ Fri, 05 Jul 2019 08:49:40: 3000000 INFO @ Fri, 05 Jul 2019 08:49:44: 4000000 INFO @ Fri, 05 Jul 2019 08:49:44: 4000000 INFO @ Fri, 05 Jul 2019 08:49:49: 4000000 INFO @ Fri, 05 Jul 2019 08:49:52: 5000000 INFO @ Fri, 05 Jul 2019 08:49:53: 5000000 INFO @ Fri, 05 Jul 2019 08:49:57: 5000000 INFO @ Fri, 05 Jul 2019 08:49:59: 6000000 INFO @ Fri, 05 Jul 2019 08:50:01: 6000000 INFO @ Fri, 05 Jul 2019 08:50:06: 6000000 INFO @ Fri, 05 Jul 2019 08:50:07: 7000000 INFO @ Fri, 05 Jul 2019 08:50:09: 7000000 INFO @ Fri, 05 Jul 2019 08:50:15: 8000000 INFO @ Fri, 05 Jul 2019 08:50:15: 7000000 INFO @ Fri, 05 Jul 2019 08:50:17: 8000000 INFO @ Fri, 05 Jul 2019 08:50:23: 9000000 INFO @ Fri, 05 Jul 2019 08:50:24: 8000000 INFO @ Fri, 05 Jul 2019 08:50:25: 9000000 INFO @ Fri, 05 Jul 2019 08:50:30: 10000000 INFO @ Fri, 05 Jul 2019 08:50:32: 10000000 INFO @ Fri, 05 Jul 2019 08:50:33: 9000000 INFO @ Fri, 05 Jul 2019 08:50:38: 11000000 INFO @ Fri, 05 Jul 2019 08:50:40: 11000000 INFO @ Fri, 05 Jul 2019 08:50:41: 10000000 INFO @ Fri, 05 Jul 2019 08:50:46: 12000000 INFO @ Fri, 05 Jul 2019 08:50:48: 12000000 INFO @ Fri, 05 Jul 2019 08:50:50: 11000000 INFO @ Fri, 05 Jul 2019 08:50:53: 13000000 INFO @ Fri, 05 Jul 2019 08:50:56: 13000000 INFO @ Fri, 05 Jul 2019 08:50:58: 12000000 INFO @ Fri, 05 Jul 2019 08:51:01: 14000000 INFO @ Fri, 05 Jul 2019 08:51:04: 14000000 INFO @ Fri, 05 Jul 2019 08:51:07: 13000000 INFO @ Fri, 05 Jul 2019 08:51:09: 15000000 INFO @ Fri, 05 Jul 2019 08:51:11: 15000000 INFO @ Fri, 05 Jul 2019 08:51:15: 14000000 INFO @ Fri, 05 Jul 2019 08:51:16: 16000000 INFO @ Fri, 05 Jul 2019 08:51:19: 16000000 INFO @ Fri, 05 Jul 2019 08:51:24: 17000000 INFO @ Fri, 05 Jul 2019 08:51:24: 15000000 INFO @ Fri, 05 Jul 2019 08:51:27: 17000000 INFO @ Fri, 05 Jul 2019 08:51:32: 18000000 INFO @ Fri, 05 Jul 2019 08:51:33: 16000000 INFO @ Fri, 05 Jul 2019 08:51:35: 18000000 INFO @ Fri, 05 Jul 2019 08:51:39: 19000000 INFO @ Fri, 05 Jul 2019 08:51:41: 17000000 INFO @ Fri, 05 Jul 2019 08:51:43: 19000000 INFO @ Fri, 05 Jul 2019 08:51:47: 20000000 INFO @ Fri, 05 Jul 2019 08:51:50: 18000000 INFO @ Fri, 05 Jul 2019 08:51:51: 20000000 INFO @ Fri, 05 Jul 2019 08:51:56: 21000000 INFO @ Fri, 05 Jul 2019 08:51:58: 21000000 INFO @ Fri, 05 Jul 2019 08:51:59: 19000000 INFO @ Fri, 05 Jul 2019 08:52:04: 22000000 INFO @ Fri, 05 Jul 2019 08:52:06: 22000000 INFO @ Fri, 05 Jul 2019 08:52:08: 20000000 INFO @ Fri, 05 Jul 2019 08:52:12: 23000000 INFO @ Fri, 05 Jul 2019 08:52:14: 23000000 INFO @ Fri, 05 Jul 2019 08:52:16: 21000000 INFO @ Fri, 05 Jul 2019 08:52:20: 24000000 INFO @ Fri, 05 Jul 2019 08:52:22: 24000000 INFO @ Fri, 05 Jul 2019 08:52:24: 22000000 INFO @ Fri, 05 Jul 2019 08:52:29: 25000000 INFO @ Fri, 05 Jul 2019 08:52:30: 25000000 INFO @ Fri, 05 Jul 2019 08:52:33: 23000000 INFO @ Fri, 05 Jul 2019 08:52:36: 26000000 INFO @ Fri, 05 Jul 2019 08:52:39: 26000000 INFO @ Fri, 05 Jul 2019 08:52:41: 24000000 INFO @ Fri, 05 Jul 2019 08:52:44: 27000000 INFO @ Fri, 05 Jul 2019 08:52:47: 27000000 INFO @ Fri, 05 Jul 2019 08:52:50: 25000000 INFO @ Fri, 05 Jul 2019 08:52:52: 28000000 INFO @ Fri, 05 Jul 2019 08:52:55: 28000000 INFO @ Fri, 05 Jul 2019 08:52:59: 26000000 INFO @ Fri, 05 Jul 2019 08:53:00: 29000000 INFO @ Fri, 05 Jul 2019 08:53:02: 29000000 INFO @ Fri, 05 Jul 2019 08:53:07: 27000000 INFO @ Fri, 05 Jul 2019 08:53:09: 30000000 INFO @ Fri, 05 Jul 2019 08:53:10: 30000000 INFO @ Fri, 05 Jul 2019 08:53:16: 28000000 INFO @ Fri, 05 Jul 2019 08:53:17: 31000000 INFO @ Fri, 05 Jul 2019 08:53:18: 31000000 INFO @ Fri, 05 Jul 2019 08:53:24: 32000000 INFO @ Fri, 05 Jul 2019 08:53:25: 29000000 INFO @ Fri, 05 Jul 2019 08:53:25: 32000000 INFO @ Fri, 05 Jul 2019 08:53:32: 33000000 INFO @ Fri, 05 Jul 2019 08:53:33: 33000000 INFO @ Fri, 05 Jul 2019 08:53:33: 30000000 INFO @ Fri, 05 Jul 2019 08:53:40: 34000000 INFO @ Fri, 05 Jul 2019 08:53:41: 34000000 INFO @ Fri, 05 Jul 2019 08:53:42: 31000000 INFO @ Fri, 05 Jul 2019 08:53:47: 35000000 INFO @ Fri, 05 Jul 2019 08:53:48: 35000000 INFO @ Fri, 05 Jul 2019 08:53:51: 32000000 INFO @ Fri, 05 Jul 2019 08:53:54: 36000000 INFO @ Fri, 05 Jul 2019 08:53:56: 36000000 INFO @ Fri, 05 Jul 2019 08:53:59: 33000000 INFO @ Fri, 05 Jul 2019 08:54:02: 37000000 INFO @ Fri, 05 Jul 2019 08:54:04: 37000000 INFO @ Fri, 05 Jul 2019 08:54:08: 34000000 INFO @ Fri, 05 Jul 2019 08:54:09: 38000000 INFO @ Fri, 05 Jul 2019 08:54:12: 38000000 INFO @ Fri, 05 Jul 2019 08:54:16: 35000000 INFO @ Fri, 05 Jul 2019 08:54:17: 39000000 INFO @ Fri, 05 Jul 2019 08:54:19: 39000000 INFO @ Fri, 05 Jul 2019 08:54:24: 40000000 INFO @ Fri, 05 Jul 2019 08:54:25: 36000000 INFO @ Fri, 05 Jul 2019 08:54:27: 40000000 INFO @ Fri, 05 Jul 2019 08:54:32: 41000000 INFO @ Fri, 05 Jul 2019 08:54:33: 37000000 INFO @ Fri, 05 Jul 2019 08:54:34: 41000000 INFO @ Fri, 05 Jul 2019 08:54:39: 42000000 INFO @ Fri, 05 Jul 2019 08:54:42: 38000000 INFO @ Fri, 05 Jul 2019 08:54:42: 42000000 INFO @ Fri, 05 Jul 2019 08:54:47: 43000000 INFO @ Fri, 05 Jul 2019 08:54:50: 43000000 INFO @ Fri, 05 Jul 2019 08:54:50: 39000000 INFO @ Fri, 05 Jul 2019 08:54:55: 44000000 INFO @ Fri, 05 Jul 2019 08:54:57: 44000000 INFO @ Fri, 05 Jul 2019 08:54:59: 40000000 INFO @ Fri, 05 Jul 2019 08:55:03: 45000000 INFO @ Fri, 05 Jul 2019 08:55:05: 45000000 INFO @ Fri, 05 Jul 2019 08:55:08: 41000000 INFO @ Fri, 05 Jul 2019 08:55:11: 46000000 INFO @ Fri, 05 Jul 2019 08:55:12: 46000000 INFO @ Fri, 05 Jul 2019 08:55:16: 42000000 INFO @ Fri, 05 Jul 2019 08:55:18: 47000000 INFO @ Fri, 05 Jul 2019 08:55:20: 47000000 INFO @ Fri, 05 Jul 2019 08:55:25: 43000000 INFO @ Fri, 05 Jul 2019 08:55:26: 48000000 INFO @ Fri, 05 Jul 2019 08:55:27: 48000000 INFO @ Fri, 05 Jul 2019 08:55:33: 44000000 INFO @ Fri, 05 Jul 2019 08:55:34: 49000000 INFO @ Fri, 05 Jul 2019 08:55:34: 49000000 INFO @ Fri, 05 Jul 2019 08:55:41: 50000000 INFO @ Fri, 05 Jul 2019 08:55:42: 50000000 INFO @ Fri, 05 Jul 2019 08:55:42: 45000000 INFO @ Fri, 05 Jul 2019 08:55:49: 51000000 INFO @ Fri, 05 Jul 2019 08:55:49: 51000000 INFO @ Fri, 05 Jul 2019 08:55:50: 46000000 INFO @ Fri, 05 Jul 2019 08:55:57: 52000000 INFO @ Fri, 05 Jul 2019 08:55:57: 52000000 INFO @ Fri, 05 Jul 2019 08:55:59: 47000000 INFO @ Fri, 05 Jul 2019 08:56:04: 53000000 INFO @ Fri, 05 Jul 2019 08:56:05: 53000000 INFO @ Fri, 05 Jul 2019 08:56:08: 48000000 INFO @ Fri, 05 Jul 2019 08:56:12: 54000000 INFO @ Fri, 05 Jul 2019 08:56:12: 54000000 INFO @ Fri, 05 Jul 2019 08:56:16: 49000000 INFO @ Fri, 05 Jul 2019 08:56:19: 55000000 INFO @ Fri, 05 Jul 2019 08:56:20: 55000000 INFO @ Fri, 05 Jul 2019 08:56:25: 50000000 INFO @ Fri, 05 Jul 2019 08:56:27: 56000000 INFO @ Fri, 05 Jul 2019 08:56:27: 56000000 INFO @ Fri, 05 Jul 2019 08:56:34: 51000000 INFO @ Fri, 05 Jul 2019 08:56:34: 57000000 INFO @ Fri, 05 Jul 2019 08:56:35: 57000000 INFO @ Fri, 05 Jul 2019 08:56:41: 58000000 INFO @ Fri, 05 Jul 2019 08:56:42: 58000000 INFO @ Fri, 05 Jul 2019 08:56:42: 52000000 INFO @ Fri, 05 Jul 2019 08:56:49: 59000000 INFO @ Fri, 05 Jul 2019 08:56:50: 59000000 INFO @ Fri, 05 Jul 2019 08:56:51: 53000000 INFO @ Fri, 05 Jul 2019 08:56:56: 60000000 INFO @ Fri, 05 Jul 2019 08:56:57: 60000000 INFO @ Fri, 05 Jul 2019 08:56:59: 54000000 INFO @ Fri, 05 Jul 2019 08:57:04: 61000000 INFO @ Fri, 05 Jul 2019 08:57:04: 61000000 INFO @ Fri, 05 Jul 2019 08:57:08: 55000000 INFO @ Fri, 05 Jul 2019 08:57:11: 62000000 INFO @ Fri, 05 Jul 2019 08:57:12: 62000000 INFO @ Fri, 05 Jul 2019 08:57:16: 56000000 INFO @ Fri, 05 Jul 2019 08:57:19: 63000000 INFO @ Fri, 05 Jul 2019 08:57:19: 63000000 INFO @ Fri, 05 Jul 2019 08:57:24: 57000000 INFO @ Fri, 05 Jul 2019 08:57:26: 64000000 INFO @ Fri, 05 Jul 2019 08:57:26: 64000000 INFO @ Fri, 05 Jul 2019 08:57:32: 58000000 INFO @ Fri, 05 Jul 2019 08:57:33: 65000000 INFO @ Fri, 05 Jul 2019 08:57:34: 65000000 INFO @ Fri, 05 Jul 2019 08:57:41: 66000000 INFO @ Fri, 05 Jul 2019 08:57:41: 59000000 INFO @ Fri, 05 Jul 2019 08:57:41: 66000000 INFO @ Fri, 05 Jul 2019 08:57:48: 67000000 INFO @ Fri, 05 Jul 2019 08:57:49: 67000000 INFO @ Fri, 05 Jul 2019 08:57:49: 60000000 INFO @ Fri, 05 Jul 2019 08:57:55: 68000000 INFO @ Fri, 05 Jul 2019 08:57:56: 68000000 INFO @ Fri, 05 Jul 2019 08:57:58: 61000000 INFO @ Fri, 05 Jul 2019 08:58:02: 69000000 INFO @ Fri, 05 Jul 2019 08:58:04: 69000000 INFO @ Fri, 05 Jul 2019 08:58:06: 62000000 INFO @ Fri, 05 Jul 2019 08:58:10: 70000000 INFO @ Fri, 05 Jul 2019 08:58:11: 70000000 INFO @ Fri, 05 Jul 2019 08:58:15: 63000000 INFO @ Fri, 05 Jul 2019 08:58:17: 71000000 INFO @ Fri, 05 Jul 2019 08:58:19: 71000000 INFO @ Fri, 05 Jul 2019 08:58:23: 64000000 INFO @ Fri, 05 Jul 2019 08:58:24: 72000000 INFO @ Fri, 05 Jul 2019 08:58:26: 72000000 INFO @ Fri, 05 Jul 2019 08:58:32: 65000000 INFO @ Fri, 05 Jul 2019 08:58:32: 73000000 INFO @ Fri, 05 Jul 2019 08:58:34: 73000000 INFO @ Fri, 05 Jul 2019 08:58:39: 74000000 INFO @ Fri, 05 Jul 2019 08:58:40: 66000000 INFO @ Fri, 05 Jul 2019 08:58:42: 74000000 INFO @ Fri, 05 Jul 2019 08:58:47: 75000000 INFO @ Fri, 05 Jul 2019 08:58:49: 67000000 INFO @ Fri, 05 Jul 2019 08:58:49: 75000000 INFO @ Fri, 05 Jul 2019 08:58:54: 76000000 INFO @ Fri, 05 Jul 2019 08:58:57: 76000000 INFO @ Fri, 05 Jul 2019 08:58:58: 68000000 INFO @ Fri, 05 Jul 2019 08:59:02: 77000000 INFO @ Fri, 05 Jul 2019 08:59:04: 77000000 INFO @ Fri, 05 Jul 2019 08:59:06: 69000000 INFO @ Fri, 05 Jul 2019 08:59:10: 78000000 INFO @ Fri, 05 Jul 2019 08:59:12: 78000000 INFO @ Fri, 05 Jul 2019 08:59:15: 70000000 INFO @ Fri, 05 Jul 2019 08:59:17: 79000000 INFO @ Fri, 05 Jul 2019 08:59:19: 79000000 INFO @ Fri, 05 Jul 2019 08:59:23: 71000000 INFO @ Fri, 05 Jul 2019 08:59:25: 80000000 INFO @ Fri, 05 Jul 2019 08:59:27: 80000000 INFO @ Fri, 05 Jul 2019 08:59:32: 72000000 INFO @ Fri, 05 Jul 2019 08:59:32: 81000000 INFO @ Fri, 05 Jul 2019 08:59:34: 81000000 INFO @ Fri, 05 Jul 2019 08:59:40: 82000000 INFO @ Fri, 05 Jul 2019 08:59:41: 73000000 INFO @ Fri, 05 Jul 2019 08:59:42: 82000000 INFO @ Fri, 05 Jul 2019 08:59:47: 83000000 INFO @ Fri, 05 Jul 2019 08:59:49: 74000000 INFO @ Fri, 05 Jul 2019 08:59:49: 83000000 INFO @ Fri, 05 Jul 2019 08:59:55: 84000000 INFO @ Fri, 05 Jul 2019 08:59:57: 84000000 INFO @ Fri, 05 Jul 2019 08:59:57: 75000000 INFO @ Fri, 05 Jul 2019 09:00:02: 85000000 INFO @ Fri, 05 Jul 2019 09:00:05: 85000000 INFO @ Fri, 05 Jul 2019 09:00:06: 76000000 INFO @ Fri, 05 Jul 2019 09:00:10: 86000000 INFO @ Fri, 05 Jul 2019 09:00:12: 86000000 INFO @ Fri, 05 Jul 2019 09:00:15: 77000000 INFO @ Fri, 05 Jul 2019 09:00:17: 87000000 INFO @ Fri, 05 Jul 2019 09:00:20: 87000000 INFO @ Fri, 05 Jul 2019 09:00:23: 78000000 INFO @ Fri, 05 Jul 2019 09:00:25: 88000000 INFO @ Fri, 05 Jul 2019 09:00:27: 88000000 INFO @ Fri, 05 Jul 2019 09:00:32: 79000000 INFO @ Fri, 05 Jul 2019 09:00:32: 89000000 INFO @ Fri, 05 Jul 2019 09:00:35: 89000000 INFO @ Fri, 05 Jul 2019 09:00:40: 90000000 INFO @ Fri, 05 Jul 2019 09:00:40: 80000000 INFO @ Fri, 05 Jul 2019 09:00:42: 90000000 INFO @ Fri, 05 Jul 2019 09:00:48: 91000000 INFO @ Fri, 05 Jul 2019 09:00:49: 81000000 INFO @ Fri, 05 Jul 2019 09:00:50: 91000000 INFO @ Fri, 05 Jul 2019 09:00:55: 92000000 INFO @ Fri, 05 Jul 2019 09:00:57: 82000000 INFO @ Fri, 05 Jul 2019 09:00:58: 92000000 INFO @ Fri, 05 Jul 2019 09:01:03: 93000000 INFO @ Fri, 05 Jul 2019 09:01:06: 93000000 INFO @ Fri, 05 Jul 2019 09:01:06: 83000000 INFO @ Fri, 05 Jul 2019 09:01:11: 94000000 INFO @ Fri, 05 Jul 2019 09:01:13: 94000000 INFO @ Fri, 05 Jul 2019 09:01:14: 84000000 INFO @ Fri, 05 Jul 2019 09:01:18: 95000000 INFO @ Fri, 05 Jul 2019 09:01:20: 95000000 INFO @ Fri, 05 Jul 2019 09:01:23: 85000000 INFO @ Fri, 05 Jul 2019 09:01:26: 96000000 INFO @ Fri, 05 Jul 2019 09:01:28: 96000000 INFO @ Fri, 05 Jul 2019 09:01:31: 86000000 INFO @ Fri, 05 Jul 2019 09:01:33: 97000000 INFO @ Fri, 05 Jul 2019 09:01:35: 97000000 INFO @ Fri, 05 Jul 2019 09:01:40: 87000000 INFO @ Fri, 05 Jul 2019 09:01:41: 98000000 INFO @ Fri, 05 Jul 2019 09:01:43: 98000000 INFO @ Fri, 05 Jul 2019 09:01:48: 99000000 INFO @ Fri, 05 Jul 2019 09:01:48: 88000000 INFO @ Fri, 05 Jul 2019 09:01:50: 99000000 INFO @ Fri, 05 Jul 2019 09:01:56: 100000000 INFO @ Fri, 05 Jul 2019 09:01:57: 89000000 INFO @ Fri, 05 Jul 2019 09:01:58: 100000000 INFO @ Fri, 05 Jul 2019 09:02:03: 101000000 INFO @ Fri, 05 Jul 2019 09:02:05: 101000000 INFO @ Fri, 05 Jul 2019 09:02:05: 90000000 INFO @ Fri, 05 Jul 2019 09:02:10: 102000000 INFO @ Fri, 05 Jul 2019 09:02:12: 102000000 INFO @ Fri, 05 Jul 2019 09:02:14: 91000000 INFO @ Fri, 05 Jul 2019 09:02:18: 103000000 INFO @ Fri, 05 Jul 2019 09:02:20: 103000000 INFO @ Fri, 05 Jul 2019 09:02:22: 92000000 INFO @ Fri, 05 Jul 2019 09:02:26: 104000000 INFO @ Fri, 05 Jul 2019 09:02:27: 104000000 INFO @ Fri, 05 Jul 2019 09:02:31: 93000000 INFO @ Fri, 05 Jul 2019 09:02:33: 105000000 INFO @ Fri, 05 Jul 2019 09:02:35: 105000000 INFO @ Fri, 05 Jul 2019 09:02:39: 94000000 INFO @ Fri, 05 Jul 2019 09:02:40: 106000000 INFO @ Fri, 05 Jul 2019 09:02:43: 106000000 INFO @ Fri, 05 Jul 2019 09:02:48: 95000000 INFO @ Fri, 05 Jul 2019 09:02:48: 107000000 INFO @ Fri, 05 Jul 2019 09:02:50: 107000000 INFO @ Fri, 05 Jul 2019 09:02:55: 108000000 INFO @ Fri, 05 Jul 2019 09:02:56: 96000000 INFO @ Fri, 05 Jul 2019 09:02:58: 108000000 INFO @ Fri, 05 Jul 2019 09:03:03: 109000000 INFO @ Fri, 05 Jul 2019 09:03:05: 97000000 INFO @ Fri, 05 Jul 2019 09:03:06: 109000000 INFO @ Fri, 05 Jul 2019 09:03:11: 110000000 INFO @ Fri, 05 Jul 2019 09:03:13: 110000000 INFO @ Fri, 05 Jul 2019 09:03:14: 98000000 INFO @ Fri, 05 Jul 2019 09:03:19: 111000000 INFO @ Fri, 05 Jul 2019 09:03:21: 111000000 INFO @ Fri, 05 Jul 2019 09:03:22: 99000000 INFO @ Fri, 05 Jul 2019 09:03:27: 112000000 INFO @ Fri, 05 Jul 2019 09:03:28: 112000000 INFO @ Fri, 05 Jul 2019 09:03:31: 100000000 INFO @ Fri, 05 Jul 2019 09:03:34: 113000000 INFO @ Fri, 05 Jul 2019 09:03:35: 113000000 INFO @ Fri, 05 Jul 2019 09:03:39: 101000000 INFO @ Fri, 05 Jul 2019 09:03:42: 114000000 INFO @ Fri, 05 Jul 2019 09:03:43: 114000000 INFO @ Fri, 05 Jul 2019 09:03:48: 102000000 INFO @ Fri, 05 Jul 2019 09:03:50: 115000000 INFO @ Fri, 05 Jul 2019 09:03:51: 115000000 INFO @ Fri, 05 Jul 2019 09:03:56: 103000000 INFO @ Fri, 05 Jul 2019 09:03:58: 116000000 INFO @ Fri, 05 Jul 2019 09:03:58: 116000000 INFO @ Fri, 05 Jul 2019 09:04:05: 104000000 INFO @ Fri, 05 Jul 2019 09:04:06: 117000000 INFO @ Fri, 05 Jul 2019 09:04:06: 117000000 INFO @ Fri, 05 Jul 2019 09:04:14: 105000000 INFO @ Fri, 05 Jul 2019 09:04:14: 118000000 INFO @ Fri, 05 Jul 2019 09:04:15: 118000000 INFO @ Fri, 05 Jul 2019 09:04:22: 106000000 INFO @ Fri, 05 Jul 2019 09:04:22: 119000000 INFO @ Fri, 05 Jul 2019 09:04:24: 119000000 INFO @ Fri, 05 Jul 2019 09:04:29: 120000000 INFO @ Fri, 05 Jul 2019 09:04:30: 107000000 INFO @ Fri, 05 Jul 2019 09:04:32: 120000000 INFO @ Fri, 05 Jul 2019 09:04:37: 121000000 INFO @ Fri, 05 Jul 2019 09:04:39: 108000000 INFO @ Fri, 05 Jul 2019 09:04:39: 121000000 INFO @ Fri, 05 Jul 2019 09:04:44: 122000000 INFO @ Fri, 05 Jul 2019 09:04:47: 122000000 INFO @ Fri, 05 Jul 2019 09:04:48: 109000000 INFO @ Fri, 05 Jul 2019 09:04:52: 123000000 INFO @ Fri, 05 Jul 2019 09:04:55: 123000000 INFO @ Fri, 05 Jul 2019 09:04:56: 110000000 INFO @ Fri, 05 Jul 2019 09:05:01: 124000000 INFO @ Fri, 05 Jul 2019 09:05:03: 124000000 INFO @ Fri, 05 Jul 2019 09:05:05: 111000000 INFO @ Fri, 05 Jul 2019 09:05:09: 125000000 INFO @ Fri, 05 Jul 2019 09:05:11: 125000000 INFO @ Fri, 05 Jul 2019 09:05:13: 112000000 INFO @ Fri, 05 Jul 2019 09:05:17: 126000000 INFO @ Fri, 05 Jul 2019 09:05:19: 126000000 INFO @ Fri, 05 Jul 2019 09:05:22: 113000000 INFO @ Fri, 05 Jul 2019 09:05:25: 127000000 INFO @ Fri, 05 Jul 2019 09:05:27: 127000000 INFO @ Fri, 05 Jul 2019 09:05:31: 114000000 INFO @ Fri, 05 Jul 2019 09:05:32: 128000000 INFO @ Fri, 05 Jul 2019 09:05:35: 128000000 INFO @ Fri, 05 Jul 2019 09:05:39: 115000000 INFO @ Fri, 05 Jul 2019 09:05:40: 129000000 INFO @ Fri, 05 Jul 2019 09:05:43: 129000000 INFO @ Fri, 05 Jul 2019 09:05:48: 130000000 INFO @ Fri, 05 Jul 2019 09:05:48: 116000000 INFO @ Fri, 05 Jul 2019 09:05:51: 130000000 INFO @ Fri, 05 Jul 2019 09:05:55: 131000000 INFO @ Fri, 05 Jul 2019 09:05:56: 117000000 INFO @ Fri, 05 Jul 2019 09:05:59: 131000000 INFO @ Fri, 05 Jul 2019 09:06:03: 132000000 INFO @ Fri, 05 Jul 2019 09:06:05: 118000000 INFO @ Fri, 05 Jul 2019 09:06:06: 132000000 INFO @ Fri, 05 Jul 2019 09:06:10: 133000000 INFO @ Fri, 05 Jul 2019 09:06:13: 119000000 INFO @ Fri, 05 Jul 2019 09:06:14: 133000000 INFO @ Fri, 05 Jul 2019 09:06:18: 134000000 INFO @ Fri, 05 Jul 2019 09:06:22: 120000000 INFO @ Fri, 05 Jul 2019 09:06:22: 134000000 INFO @ Fri, 05 Jul 2019 09:06:25: 135000000 INFO @ Fri, 05 Jul 2019 09:06:30: 135000000 INFO @ Fri, 05 Jul 2019 09:06:30: 121000000 INFO @ Fri, 05 Jul 2019 09:06:33: 136000000 INFO @ Fri, 05 Jul 2019 09:06:37: 136000000 INFO @ Fri, 05 Jul 2019 09:06:39: 122000000 INFO @ Fri, 05 Jul 2019 09:06:41: 137000000 INFO @ Fri, 05 Jul 2019 09:06:45: 137000000 INFO @ Fri, 05 Jul 2019 09:06:47: 123000000 INFO @ Fri, 05 Jul 2019 09:06:49: 138000000 INFO @ Fri, 05 Jul 2019 09:06:53: 138000000 INFO @ Fri, 05 Jul 2019 09:06:56: 124000000 INFO @ Fri, 05 Jul 2019 09:06:57: 139000000 INFO @ Fri, 05 Jul 2019 09:07:00: 139000000 INFO @ Fri, 05 Jul 2019 09:07:04: 140000000 INFO @ Fri, 05 Jul 2019 09:07:05: 125000000 INFO @ Fri, 05 Jul 2019 09:07:08: 140000000 INFO @ Fri, 05 Jul 2019 09:07:12: 141000000 INFO @ Fri, 05 Jul 2019 09:07:13: 126000000 INFO @ Fri, 05 Jul 2019 09:07:15: 141000000 INFO @ Fri, 05 Jul 2019 09:07:20: 142000000 INFO @ Fri, 05 Jul 2019 09:07:22: 127000000 INFO @ Fri, 05 Jul 2019 09:07:23: 142000000 INFO @ Fri, 05 Jul 2019 09:07:27: 143000000 INFO @ Fri, 05 Jul 2019 09:07:30: 128000000 INFO @ Fri, 05 Jul 2019 09:07:31: 143000000 INFO @ Fri, 05 Jul 2019 09:07:35: 144000000 INFO @ Fri, 05 Jul 2019 09:07:38: 144000000 INFO @ Fri, 05 Jul 2019 09:07:39: 129000000 INFO @ Fri, 05 Jul 2019 09:07:42: 145000000 INFO @ Fri, 05 Jul 2019 09:07:46: 145000000 INFO @ Fri, 05 Jul 2019 09:07:47: 130000000 INFO @ Fri, 05 Jul 2019 09:07:49: 146000000 INFO @ Fri, 05 Jul 2019 09:07:54: 146000000 INFO @ Fri, 05 Jul 2019 09:07:55: 131000000 INFO @ Fri, 05 Jul 2019 09:07:57: 147000000 INFO @ Fri, 05 Jul 2019 09:08:01: 147000000 INFO @ Fri, 05 Jul 2019 09:08:03: 132000000 INFO @ Fri, 05 Jul 2019 09:08:04: 148000000 INFO @ Fri, 05 Jul 2019 09:08:09: 148000000 INFO @ Fri, 05 Jul 2019 09:08:12: 149000000 INFO @ Fri, 05 Jul 2019 09:08:12: 133000000 INFO @ Fri, 05 Jul 2019 09:08:17: 149000000 INFO @ Fri, 05 Jul 2019 09:08:19: 134000000 INFO @ Fri, 05 Jul 2019 09:08:19: 150000000 INFO @ Fri, 05 Jul 2019 09:08:25: 150000000 INFO @ Fri, 05 Jul 2019 09:08:27: 135000000 INFO @ Fri, 05 Jul 2019 09:08:27: 151000000 INFO @ Fri, 05 Jul 2019 09:08:33: 151000000 INFO @ Fri, 05 Jul 2019 09:08:35: 136000000 INFO @ Fri, 05 Jul 2019 09:08:35: 152000000 INFO @ Fri, 05 Jul 2019 09:08:40: 152000000 INFO @ Fri, 05 Jul 2019 09:08:42: 137000000 INFO @ Fri, 05 Jul 2019 09:08:43: 153000000 INFO @ Fri, 05 Jul 2019 09:08:48: 153000000 INFO @ Fri, 05 Jul 2019 09:08:50: 154000000 INFO @ Fri, 05 Jul 2019 09:08:51: 138000000 INFO @ Fri, 05 Jul 2019 09:08:56: 154000000 INFO @ Fri, 05 Jul 2019 09:08:58: 155000000 INFO @ Fri, 05 Jul 2019 09:08:58: 139000000 INFO @ Fri, 05 Jul 2019 09:09:04: 155000000 INFO @ Fri, 05 Jul 2019 09:09:05: 156000000 INFO @ Fri, 05 Jul 2019 09:09:05: 140000000 INFO @ Fri, 05 Jul 2019 09:09:11: 156000000 INFO @ Fri, 05 Jul 2019 09:09:13: 157000000 INFO @ Fri, 05 Jul 2019 09:09:14: 141000000 INFO @ Fri, 05 Jul 2019 09:09:17: #1 tag size is determined as 50 bps INFO @ Fri, 05 Jul 2019 09:09:17: #1 tag size = 50 INFO @ Fri, 05 Jul 2019 09:09:17: #1 total tags in treatment: 157298027 INFO @ Fri, 05 Jul 2019 09:09:17: #1 user defined the maximum tags... INFO @ Fri, 05 Jul 2019 09:09:17: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Fri, 05 Jul 2019 09:09:19: 157000000 INFO @ Fri, 05 Jul 2019 09:09:20: #1 tags after filtering in treatment: 157297996 INFO @ Fri, 05 Jul 2019 09:09:20: #1 Redundant rate of treatment: 0.00 INFO @ Fri, 05 Jul 2019 09:09:20: #1 finished! INFO @ Fri, 05 Jul 2019 09:09:20: #2 Build Peak Model... INFO @ Fri, 05 Jul 2019 09:09:20: #2 looking for paired plus/minus strand peaks... INFO @ Fri, 05 Jul 2019 09:09:21: 142000000 INFO @ Fri, 05 Jul 2019 09:09:24: #1 tag size is determined as 50 bps INFO @ Fri, 05 Jul 2019 09:09:24: #1 tag size = 50 INFO @ Fri, 05 Jul 2019 09:09:24: #1 total tags in treatment: 157298027 INFO @ Fri, 05 Jul 2019 09:09:24: #1 user defined the maximum tags... INFO @ Fri, 05 Jul 2019 09:09:24: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Fri, 05 Jul 2019 09:09:27: #1 tags after filtering in treatment: 157297996 INFO @ Fri, 05 Jul 2019 09:09:27: #1 Redundant rate of treatment: 0.00 INFO @ Fri, 05 Jul 2019 09:09:27: #1 finished! INFO @ Fri, 05 Jul 2019 09:09:27: #2 Build Peak Model... INFO @ Fri, 05 Jul 2019 09:09:27: #2 looking for paired plus/minus strand peaks... INFO @ Fri, 05 Jul 2019 09:09:29: 143000000 INFO @ Fri, 05 Jul 2019 09:09:35: #2 number of paired peaks: 7827 INFO @ Fri, 05 Jul 2019 09:09:35: start model_add_line... INFO @ Fri, 05 Jul 2019 09:09:37: start X-correlation... INFO @ Fri, 05 Jul 2019 09:09:37: end of X-cor INFO @ Fri, 05 Jul 2019 09:09:37: #2 finished! INFO @ Fri, 05 Jul 2019 09:09:37: #2 predicted fragment length is 113 bps INFO @ Fri, 05 Jul 2019 09:09:37: #2 alternative fragment length(s) may be 3,113 bps INFO @ Fri, 05 Jul 2019 09:09:37: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/rn6/ERX101885/ERX101885.10_model.r INFO @ Fri, 05 Jul 2019 09:09:37: #3 Call peaks... INFO @ Fri, 05 Jul 2019 09:09:37: #3 Pre-compute pvalue-qvalue table... INFO @ Fri, 05 Jul 2019 09:09:37: 144000000 INFO @ Fri, 05 Jul 2019 09:09:42: #2 number of paired peaks: 7827 INFO @ Fri, 05 Jul 2019 09:09:42: start model_add_line... INFO @ Fri, 05 Jul 2019 09:09:44: start X-correlation... INFO @ Fri, 05 Jul 2019 09:09:44: end of X-cor INFO @ Fri, 05 Jul 2019 09:09:44: #2 finished! INFO @ Fri, 05 Jul 2019 09:09:44: #2 predicted fragment length is 113 bps INFO @ Fri, 05 Jul 2019 09:09:44: #2 alternative fragment length(s) may be 3,113 bps INFO @ Fri, 05 Jul 2019 09:09:44: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/rn6/ERX101885/ERX101885.05_model.r INFO @ Fri, 05 Jul 2019 09:09:44: #3 Call peaks... INFO @ Fri, 05 Jul 2019 09:09:44: #3 Pre-compute pvalue-qvalue table... INFO @ Fri, 05 Jul 2019 09:09:45: 145000000 INFO @ Fri, 05 Jul 2019 09:09:52: 146000000 INFO @ Fri, 05 Jul 2019 09:10:00: 147000000 INFO @ Fri, 05 Jul 2019 09:10:07: 148000000 INFO @ Fri, 05 Jul 2019 09:10:15: 149000000 INFO @ Fri, 05 Jul 2019 09:10:22: 150000000 INFO @ Fri, 05 Jul 2019 09:10:30: 151000000 INFO @ Fri, 05 Jul 2019 09:10:38: 152000000 INFO @ Fri, 05 Jul 2019 09:10:46: 153000000 INFO @ Fri, 05 Jul 2019 09:10:53: 154000000 INFO @ Fri, 05 Jul 2019 09:11:01: 155000000 INFO @ Fri, 05 Jul 2019 09:11:08: 156000000 INFO @ Fri, 05 Jul 2019 09:11:16: 157000000 INFO @ Fri, 05 Jul 2019 09:11:20: #1 tag size is determined as 50 bps INFO @ Fri, 05 Jul 2019 09:11:20: #1 tag size = 50 INFO @ Fri, 05 Jul 2019 09:11:20: #1 total tags in treatment: 157298027 INFO @ Fri, 05 Jul 2019 09:11:20: #1 user defined the maximum tags... INFO @ Fri, 05 Jul 2019 09:11:20: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Fri, 05 Jul 2019 09:11:24: #1 tags after filtering in treatment: 157297996 INFO @ Fri, 05 Jul 2019 09:11:24: #1 Redundant rate of treatment: 0.00 INFO @ Fri, 05 Jul 2019 09:11:24: #1 finished! INFO @ Fri, 05 Jul 2019 09:11:24: #2 Build Peak Model... INFO @ Fri, 05 Jul 2019 09:11:24: #2 looking for paired plus/minus strand peaks... INFO @ Fri, 05 Jul 2019 09:11:39: #2 number of paired peaks: 7827 INFO @ Fri, 05 Jul 2019 09:11:39: start model_add_line... INFO @ Fri, 05 Jul 2019 09:11:41: start X-correlation... INFO @ Fri, 05 Jul 2019 09:11:41: end of X-cor INFO @ Fri, 05 Jul 2019 09:11:41: #2 finished! INFO @ Fri, 05 Jul 2019 09:11:41: #2 predicted fragment length is 113 bps INFO @ Fri, 05 Jul 2019 09:11:41: #2 alternative fragment length(s) may be 3,113 bps INFO @ Fri, 05 Jul 2019 09:11:41: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/rn6/ERX101885/ERX101885.20_model.r INFO @ Fri, 05 Jul 2019 09:11:41: #3 Call peaks... INFO @ Fri, 05 Jul 2019 09:11:41: #3 Pre-compute pvalue-qvalue table... INFO @ Fri, 05 Jul 2019 09:17:29: #3 Call peaks for each chromosome... INFO @ Fri, 05 Jul 2019 09:17:38: #3 Call peaks for each chromosome... INFO @ Fri, 05 Jul 2019 09:19:34: #3 Call peaks for each chromosome... INFO @ Fri, 05 Jul 2019 09:21:39: #4 Write output xls file... /home/okishinya/chipatlas/results/rn6/ERX101885/ERX101885.10_peaks.xls INFO @ Fri, 05 Jul 2019 09:21:39: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/rn6/ERX101885/ERX101885.10_peaks.narrowPeak INFO @ Fri, 05 Jul 2019 09:21:39: #4 Write summits bed file... /home/okishinya/chipatlas/results/rn6/ERX101885/ERX101885.10_summits.bed INFO @ Fri, 05 Jul 2019 09:21:40: Done! pass1 - making usageList (97 chroms): 3 millis pass2 - checking and writing primary data (5880 records, 4 fields): 18 millis CompletedMACS2peakCalling INFO @ Fri, 05 Jul 2019 09:21:51: #4 Write output xls file... /home/okishinya/chipatlas/results/rn6/ERX101885/ERX101885.05_peaks.xls INFO @ Fri, 05 Jul 2019 09:21:52: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/rn6/ERX101885/ERX101885.05_peaks.narrowPeak INFO @ Fri, 05 Jul 2019 09:21:52: #4 Write summits bed file... /home/okishinya/chipatlas/results/rn6/ERX101885/ERX101885.05_summits.bed INFO @ Fri, 05 Jul 2019 09:21:52: Done! pass1 - making usageList (160 chroms): 9 millis pass2 - checking and writing primary data (23939 records, 4 fields): 44 millis CompletedMACS2peakCalling INFO @ Fri, 05 Jul 2019 09:23:44: #4 Write output xls file... /home/okishinya/chipatlas/results/rn6/ERX101885/ERX101885.20_peaks.xls INFO @ Fri, 05 Jul 2019 09:23:44: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/rn6/ERX101885/ERX101885.20_peaks.narrowPeak INFO @ Fri, 05 Jul 2019 09:23:44: #4 Write summits bed file... /home/okishinya/chipatlas/results/rn6/ERX101885/ERX101885.20_summits.bed INFO @ Fri, 05 Jul 2019 09:23:44: Done! pass1 - making usageList (53 chroms): 2 millis pass2 - checking and writing primary data (1086 records, 4 fields): 9 millis CompletedMACS2peakCalling BedGraph に変換しました。 BigWig に変換中... BigWig に変換しました。