Job ID = 2001528 sra ファイルのダウンロード中... Read layout: SINGLE fastq に変換中... 2019-07-04T19:33:32 fasterq-dump.2.9.6 sys: timeout exhausted while reading file within network system module - mbedtls_ssl_read returned -76 ( NET - Reading information from the socket failed ) 2019-07-04T19:33:38 fasterq-dump.2.9.6 sys: timeout exhausted while reading file within network system module - mbedtls_ssl_read returned -76 ( NET - Reading information from the socket failed ) 2019-07-04T19:36:47 fasterq-dump.2.9.6 sys: timeout exhausted while reading file within network system module - mbedtls_ssl_read returned -76 ( NET - Reading information from the socket failed ) 2019-07-04T19:36:47 fasterq-dump.2.9.6 sys: timeout exhausted while reading file within network system module - mbedtls_ssl_read returned -76 ( NET - Reading information from the socket failed ) 2019-07-04T19:44:50 fasterq-dump.2.9.6 sys: error unknown while reading file within network system module - mbedtls_ssl_read returned -76 ( NET - Reading information from the socket failed ) 2019-07-04T19:56:01 fasterq-dump.2.9.6 sys: timeout exhausted while reading file within network system module - mbedtls_ssl_read returned -76 ( NET - Reading information from the socket failed ) 2019-07-04T19:57:46 fasterq-dump.2.9.6 sys: timeout exhausted while reading file within network system module - mbedtls_ssl_read returned -76 ( NET - Reading information from the socket failed ) 2019-07-04T20:04:55 fasterq-dump.2.9.6 sys: timeout exhausted while reading file within network system module - mbedtls_ssl_read returned -76 ( NET - Reading information from the socket failed ) 2019-07-04T20:04:58 fasterq-dump.2.9.6 sys: timeout exhausted while reading file within network system module - mbedtls_ssl_read returned -76 ( NET - Reading information from the socket failed ) 2019-07-04T20:04:58 fasterq-dump.2.9.6 sys: timeout exhausted while reading file within network system module - mbedtls_ssl_read returned -76 ( NET - Reading information from the socket failed ) 2019-07-04T20:07:37 fasterq-dump.2.9.6 sys: timeout exhausted while reading file within network system module - mbedtls_ssl_read returned -76 ( NET - Reading information from the socket failed ) 2019-07-04T20:11:04 fasterq-dump.2.9.6 sys: timeout exhausted while reading file within network system module - mbedtls_ssl_read returned -76 ( NET - Reading information from the socket failed ) 2019-07-04T20:15:10 fasterq-dump.2.9.6 sys: timeout exhausted while reading file within network system module - mbedtls_ssl_read returned -76 ( NET - Reading information from the socket failed ) 2019-07-04T20:15:32 fasterq-dump.2.9.6 sys: timeout exhausted while reading file within network system module - mbedtls_ssl_read returned -76 ( NET - Reading information from the socket failed ) spots read : 175,530,360 reads read : 175,530,360 reads written : 175,530,360 rm: cannot remove ‘[DSE]RR*’: No such file or directory fastq に変換しました。 bowtie でマッピング中... Time loading reference: 00:00:01 Time loading forward index: 00:00:02 Time loading mirror index: 00:00:01 Multiseed full-index search: 01:54:47 175530360 reads; of these: 175530360 (100.00%) were unpaired; of these: 7746843 (4.41%) aligned 0 times 123243479 (70.21%) aligned exactly 1 time 44540038 (25.37%) aligned >1 times 95.59% overall alignment rate Time searching: 01:54:51 Overall time: 01:54:51 マッピングが完了しました。 samtools でBAM に変換中... [samopen] SAM header is present: 953 sequences. [bam_sort_core] merging from 72 files... [bam_rmdupse_core] 21389772 / 167783517 = 0.1275 in library ' ' BAM に変換しました。 Bed ファイルを作成中... BedGraph に変換中... INFO @ Fri, 05 Jul 2019 08:57:22: # Command line: callpeak -t /home/okishinya/chipatlas/results/rn6/ERX101872/ERX101872.bam -f BAM -g 2.15e9 -n /home/okishinya/chipatlas/results/rn6/ERX101872/ERX101872.05 -q 1e-05 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/rn6/ERX101872/ERX101872.05 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/rn6/ERX101872/ERX101872.bam'] # control file = None # effective genome size = 2.15e+09 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-05 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Fri, 05 Jul 2019 08:57:22: #1 read tag files... INFO @ Fri, 05 Jul 2019 08:57:22: #1 read treatment tags... INFO @ Fri, 05 Jul 2019 08:57:23: # Command line: callpeak -t /home/okishinya/chipatlas/results/rn6/ERX101872/ERX101872.bam -f BAM -g 2.15e9 -n /home/okishinya/chipatlas/results/rn6/ERX101872/ERX101872.10 -q 1e-10 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/rn6/ERX101872/ERX101872.10 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/rn6/ERX101872/ERX101872.bam'] # control file = None # effective genome size = 2.15e+09 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-10 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Fri, 05 Jul 2019 08:57:23: #1 read tag files... INFO @ Fri, 05 Jul 2019 08:57:23: #1 read treatment tags... INFO @ Fri, 05 Jul 2019 08:57:24: # Command line: callpeak -t /home/okishinya/chipatlas/results/rn6/ERX101872/ERX101872.bam -f BAM -g 2.15e9 -n /home/okishinya/chipatlas/results/rn6/ERX101872/ERX101872.20 -q 1e-20 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/rn6/ERX101872/ERX101872.20 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/rn6/ERX101872/ERX101872.bam'] # control file = None # effective genome size = 2.15e+09 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-20 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Fri, 05 Jul 2019 08:57:24: #1 read tag files... INFO @ Fri, 05 Jul 2019 08:57:24: #1 read treatment tags... INFO @ Fri, 05 Jul 2019 08:57:33: 1000000 INFO @ Fri, 05 Jul 2019 08:57:34: 1000000 INFO @ Fri, 05 Jul 2019 08:57:34: 1000000 INFO @ Fri, 05 Jul 2019 08:57:44: 2000000 INFO @ Fri, 05 Jul 2019 08:57:45: 2000000 INFO @ Fri, 05 Jul 2019 08:57:45: 2000000 INFO @ Fri, 05 Jul 2019 08:57:54: 3000000 INFO @ Fri, 05 Jul 2019 08:57:55: 3000000 INFO @ Fri, 05 Jul 2019 08:57:56: 3000000 INFO @ Fri, 05 Jul 2019 08:58:04: 4000000 INFO @ Fri, 05 Jul 2019 08:58:06: 4000000 INFO @ Fri, 05 Jul 2019 08:58:06: 4000000 INFO @ Fri, 05 Jul 2019 08:58:14: 5000000 INFO @ Fri, 05 Jul 2019 08:58:17: 5000000 INFO @ Fri, 05 Jul 2019 08:58:17: 5000000 INFO @ Fri, 05 Jul 2019 08:58:24: 6000000 INFO @ Fri, 05 Jul 2019 08:58:27: 6000000 INFO @ Fri, 05 Jul 2019 08:58:28: 6000000 INFO @ Fri, 05 Jul 2019 08:58:34: 7000000 INFO @ Fri, 05 Jul 2019 08:58:38: 7000000 INFO @ Fri, 05 Jul 2019 08:58:39: 7000000 INFO @ Fri, 05 Jul 2019 08:58:44: 8000000 INFO @ Fri, 05 Jul 2019 08:58:49: 8000000 INFO @ Fri, 05 Jul 2019 08:58:50: 8000000 INFO @ Fri, 05 Jul 2019 08:58:54: 9000000 INFO @ Fri, 05 Jul 2019 08:58:59: 9000000 INFO @ Fri, 05 Jul 2019 08:59:01: 9000000 INFO @ Fri, 05 Jul 2019 08:59:04: 10000000 INFO @ Fri, 05 Jul 2019 08:59:10: 10000000 INFO @ Fri, 05 Jul 2019 08:59:12: 10000000 INFO @ Fri, 05 Jul 2019 08:59:14: 11000000 INFO @ Fri, 05 Jul 2019 08:59:20: 11000000 INFO @ Fri, 05 Jul 2019 08:59:23: 11000000 INFO @ Fri, 05 Jul 2019 08:59:24: 12000000 INFO @ Fri, 05 Jul 2019 08:59:30: 12000000 INFO @ Fri, 05 Jul 2019 08:59:33: 12000000 INFO @ Fri, 05 Jul 2019 08:59:34: 13000000 INFO @ Fri, 05 Jul 2019 08:59:41: 13000000 INFO @ Fri, 05 Jul 2019 08:59:43: 14000000 INFO @ Fri, 05 Jul 2019 08:59:44: 13000000 INFO @ Fri, 05 Jul 2019 08:59:51: 14000000 INFO @ Fri, 05 Jul 2019 08:59:53: 15000000 INFO @ Fri, 05 Jul 2019 08:59:55: 14000000 INFO @ Fri, 05 Jul 2019 09:00:01: 15000000 INFO @ Fri, 05 Jul 2019 09:00:03: 16000000 INFO @ Fri, 05 Jul 2019 09:00:05: 15000000 INFO @ Fri, 05 Jul 2019 09:00:11: 16000000 INFO @ 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2019 09:01:31: 25000000 INFO @ Fri, 05 Jul 2019 09:01:33: 24000000 INFO @ Fri, 05 Jul 2019 09:01:40: 24000000 INFO @ Fri, 05 Jul 2019 09:01:41: 26000000 INFO @ Fri, 05 Jul 2019 09:01:43: 25000000 INFO @ Fri, 05 Jul 2019 09:01:50: 25000000 INFO @ Fri, 05 Jul 2019 09:01:51: 27000000 INFO @ Fri, 05 Jul 2019 09:01:54: 26000000 INFO @ Fri, 05 Jul 2019 09:02:01: 26000000 INFO @ Fri, 05 Jul 2019 09:02:01: 28000000 INFO @ Fri, 05 Jul 2019 09:02:04: 27000000 INFO @ Fri, 05 Jul 2019 09:02:11: 29000000 INFO @ Fri, 05 Jul 2019 09:02:12: 27000000 INFO @ Fri, 05 Jul 2019 09:02:15: 28000000 INFO @ Fri, 05 Jul 2019 09:02:21: 30000000 INFO @ Fri, 05 Jul 2019 09:02:22: 28000000 INFO @ Fri, 05 Jul 2019 09:02:25: 29000000 INFO @ Fri, 05 Jul 2019 09:02:31: 31000000 INFO @ Fri, 05 Jul 2019 09:02:33: 29000000 INFO @ Fri, 05 Jul 2019 09:02:35: 30000000 INFO @ Fri, 05 Jul 2019 09:02:41: 32000000 INFO @ Fri, 05 Jul 2019 09:02:43: 30000000 INFO @ Fri, 05 Jul 2019 09:02:45: 31000000 INFO @ Fri, 05 Jul 2019 09:02:50: 33000000 INFO @ Fri, 05 Jul 2019 09:02:53: 31000000 INFO @ Fri, 05 Jul 2019 09:02:56: 32000000 INFO @ Fri, 05 Jul 2019 09:03:00: 34000000 INFO @ Fri, 05 Jul 2019 09:03:04: 32000000 INFO @ Fri, 05 Jul 2019 09:03:06: 33000000 INFO @ Fri, 05 Jul 2019 09:03:10: 35000000 INFO @ Fri, 05 Jul 2019 09:03:14: 33000000 INFO @ Fri, 05 Jul 2019 09:03:16: 34000000 INFO @ Fri, 05 Jul 2019 09:03:20: 36000000 INFO @ Fri, 05 Jul 2019 09:03:25: 34000000 INFO @ Fri, 05 Jul 2019 09:03:27: 35000000 INFO @ Fri, 05 Jul 2019 09:03:30: 37000000 INFO @ Fri, 05 Jul 2019 09:03:36: 35000000 INFO @ Fri, 05 Jul 2019 09:03:37: 36000000 INFO @ Fri, 05 Jul 2019 09:03:40: 38000000 INFO @ Fri, 05 Jul 2019 09:03:46: 36000000 INFO @ Fri, 05 Jul 2019 09:03:47: 37000000 INFO @ Fri, 05 Jul 2019 09:03:50: 39000000 INFO @ Fri, 05 Jul 2019 09:03:56: 37000000 INFO @ Fri, 05 Jul 2019 09:03:58: 38000000 INFO @ Fri, 05 Jul 2019 09:04:00: 40000000 INFO @ Fri, 05 Jul 2019 09:04:07: 38000000 INFO @ Fri, 05 Jul 2019 09:04:08: 39000000 INFO @ Fri, 05 Jul 2019 09:04:10: 41000000 INFO @ Fri, 05 Jul 2019 09:04:19: 40000000 INFO @ Fri, 05 Jul 2019 09:04:19: 39000000 INFO @ Fri, 05 Jul 2019 09:04:20: 42000000 INFO @ Fri, 05 Jul 2019 09:04:29: 41000000 INFO @ Fri, 05 Jul 2019 09:04:29: 43000000 INFO @ Fri, 05 Jul 2019 09:04:30: 40000000 INFO @ Fri, 05 Jul 2019 09:04:39: 44000000 INFO @ Fri, 05 Jul 2019 09:04:39: 42000000 INFO @ Fri, 05 Jul 2019 09:04:41: 41000000 INFO @ Fri, 05 Jul 2019 09:04:49: 45000000 INFO @ Fri, 05 Jul 2019 09:04:50: 43000000 INFO @ Fri, 05 Jul 2019 09:04:51: 42000000 INFO @ Fri, 05 Jul 2019 09:04:59: 46000000 INFO @ Fri, 05 Jul 2019 09:05:00: 44000000 INFO @ Fri, 05 Jul 2019 09:05:02: 43000000 INFO @ Fri, 05 Jul 2019 09:05:08: 47000000 INFO @ Fri, 05 Jul 2019 09:05:10: 45000000 INFO @ Fri, 05 Jul 2019 09:05:13: 44000000 INFO @ Fri, 05 Jul 2019 09:05:18: 48000000 INFO @ Fri, 05 Jul 2019 09:05:20: 46000000 INFO @ Fri, 05 Jul 2019 09:05:23: 45000000 INFO @ Fri, 05 Jul 2019 09:05:28: 49000000 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09:08:01: 65000000 INFO @ Fri, 05 Jul 2019 09:08:08: 61000000 INFO @ Fri, 05 Jul 2019 09:08:09: 63000000 INFO @ Fri, 05 Jul 2019 09:08:11: 66000000 INFO @ Fri, 05 Jul 2019 09:08:19: 62000000 INFO @ Fri, 05 Jul 2019 09:08:19: 64000000 INFO @ Fri, 05 Jul 2019 09:08:20: 67000000 INFO @ Fri, 05 Jul 2019 09:08:29: 63000000 INFO @ Fri, 05 Jul 2019 09:08:29: 65000000 INFO @ Fri, 05 Jul 2019 09:08:30: 68000000 INFO @ Fri, 05 Jul 2019 09:08:38: 64000000 INFO @ Fri, 05 Jul 2019 09:08:39: 66000000 INFO @ Fri, 05 Jul 2019 09:08:39: 69000000 INFO @ Fri, 05 Jul 2019 09:08:49: 67000000 INFO @ Fri, 05 Jul 2019 09:08:49: 65000000 INFO @ Fri, 05 Jul 2019 09:08:49: 70000000 INFO @ Fri, 05 Jul 2019 09:08:58: 68000000 INFO @ Fri, 05 Jul 2019 09:08:59: 71000000 INFO @ Fri, 05 Jul 2019 09:08:59: 66000000 INFO @ Fri, 05 Jul 2019 09:09:08: 69000000 INFO @ Fri, 05 Jul 2019 09:09:09: 72000000 INFO @ Fri, 05 Jul 2019 09:09:09: 67000000 INFO @ Fri, 05 Jul 2019 09:09:18: 70000000 INFO @ Fri, 05 Jul 2019 09:09:18: 73000000 INFO @ Fri, 05 Jul 2019 09:09:19: 68000000 INFO @ Fri, 05 Jul 2019 09:09:28: 74000000 INFO @ Fri, 05 Jul 2019 09:09:29: 71000000 INFO @ Fri, 05 Jul 2019 09:09:29: 69000000 INFO @ Fri, 05 Jul 2019 09:09:37: 75000000 INFO @ Fri, 05 Jul 2019 09:09:39: 72000000 INFO @ Fri, 05 Jul 2019 09:09:39: 70000000 INFO @ Fri, 05 Jul 2019 09:09:47: 76000000 INFO @ Fri, 05 Jul 2019 09:09:48: 73000000 INFO @ Fri, 05 Jul 2019 09:09:50: 71000000 INFO @ Fri, 05 Jul 2019 09:09:57: 77000000 INFO @ Fri, 05 Jul 2019 09:09:59: 74000000 INFO @ Fri, 05 Jul 2019 09:10:00: 72000000 INFO @ Fri, 05 Jul 2019 09:10:06: 78000000 INFO @ Fri, 05 Jul 2019 09:10:09: 75000000 INFO @ Fri, 05 Jul 2019 09:10:10: 73000000 INFO @ Fri, 05 Jul 2019 09:10:16: 79000000 INFO @ Fri, 05 Jul 2019 09:10:19: 76000000 INFO @ Fri, 05 Jul 2019 09:10:20: 74000000 INFO @ Fri, 05 Jul 2019 09:10:25: 80000000 INFO @ Fri, 05 Jul 2019 09:10:28: 77000000 INFO @ Fri, 05 Jul 2019 09:10:30: 75000000 INFO @ Fri, 05 Jul 2019 09:10:35: 81000000 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05 Jul 2019 09:11:53: 89000000 INFO @ Fri, 05 Jul 2019 09:11:58: 86000000 INFO @ Fri, 05 Jul 2019 09:12:01: 84000000 INFO @ Fri, 05 Jul 2019 09:12:03: 90000000 INFO @ Fri, 05 Jul 2019 09:12:08: 87000000 INFO @ Fri, 05 Jul 2019 09:12:11: 85000000 INFO @ Fri, 05 Jul 2019 09:12:12: 91000000 INFO @ Fri, 05 Jul 2019 09:12:18: 88000000 INFO @ Fri, 05 Jul 2019 09:12:21: 86000000 INFO @ Fri, 05 Jul 2019 09:12:22: 92000000 INFO @ Fri, 05 Jul 2019 09:12:28: 89000000 INFO @ Fri, 05 Jul 2019 09:12:31: 87000000 INFO @ Fri, 05 Jul 2019 09:12:31: 93000000 INFO @ Fri, 05 Jul 2019 09:12:38: 90000000 INFO @ Fri, 05 Jul 2019 09:12:41: 88000000 INFO @ Fri, 05 Jul 2019 09:12:41: 94000000 INFO @ Fri, 05 Jul 2019 09:12:48: 91000000 INFO @ Fri, 05 Jul 2019 09:12:50: 89000000 INFO @ Fri, 05 Jul 2019 09:12:50: 95000000 INFO @ Fri, 05 Jul 2019 09:12:57: 92000000 INFO @ Fri, 05 Jul 2019 09:13:00: 90000000 INFO @ Fri, 05 Jul 2019 09:13:00: 96000000 INFO @ Fri, 05 Jul 2019 09:13:07: 93000000 INFO @ Fri, 05 Jul 2019 09:13:10: 91000000 INFO @ Fri, 05 Jul 2019 09:13:10: 97000000 INFO @ Fri, 05 Jul 2019 09:13:17: 94000000 INFO @ Fri, 05 Jul 2019 09:13:20: 92000000 INFO @ Fri, 05 Jul 2019 09:13:21: 98000000 INFO @ Fri, 05 Jul 2019 09:13:26: 95000000 INFO @ Fri, 05 Jul 2019 09:13:30: 93000000 INFO @ Fri, 05 Jul 2019 09:13:31: 99000000 INFO @ Fri, 05 Jul 2019 09:13:36: 96000000 INFO @ Fri, 05 Jul 2019 09:13:41: 94000000 INFO @ Fri, 05 Jul 2019 09:13:41: 100000000 INFO @ Fri, 05 Jul 2019 09:13:46: 97000000 INFO @ Fri, 05 Jul 2019 09:13:51: 95000000 INFO @ Fri, 05 Jul 2019 09:13:51: 101000000 INFO @ Fri, 05 Jul 2019 09:13:56: 98000000 INFO @ Fri, 05 Jul 2019 09:14:01: 96000000 INFO @ Fri, 05 Jul 2019 09:14:02: 102000000 INFO @ Fri, 05 Jul 2019 09:14:06: 99000000 INFO @ Fri, 05 Jul 2019 09:14:11: 97000000 INFO @ Fri, 05 Jul 2019 09:14:12: 103000000 INFO @ Fri, 05 Jul 2019 09:14:16: 100000000 INFO @ Fri, 05 Jul 2019 09:14:21: 104000000 INFO @ Fri, 05 Jul 2019 09:14:21: 98000000 INFO @ Fri, 05 Jul 2019 09:14:25: 101000000 INFO @ Fri, 05 Jul 2019 09:14:31: 99000000 INFO @ Fri, 05 Jul 2019 09:14:31: 105000000 INFO @ Fri, 05 Jul 2019 09:14:36: 102000000 INFO @ Fri, 05 Jul 2019 09:14:41: 100000000 INFO @ Fri, 05 Jul 2019 09:14:41: 106000000 INFO @ Fri, 05 Jul 2019 09:14:46: 103000000 INFO @ Fri, 05 Jul 2019 09:14:51: 107000000 INFO @ Fri, 05 Jul 2019 09:14:51: 101000000 INFO @ Fri, 05 Jul 2019 09:14:56: 104000000 INFO @ Fri, 05 Jul 2019 09:15:00: 108000000 INFO @ Fri, 05 Jul 2019 09:15:01: 102000000 INFO @ Fri, 05 Jul 2019 09:15:05: 105000000 INFO @ Fri, 05 Jul 2019 09:15:10: 109000000 INFO @ Fri, 05 Jul 2019 09:15:10: 103000000 INFO @ Fri, 05 Jul 2019 09:15:15: 106000000 INFO @ Fri, 05 Jul 2019 09:15:20: 110000000 INFO @ Fri, 05 Jul 2019 09:15:20: 104000000 INFO @ Fri, 05 Jul 2019 09:15:25: 107000000 INFO @ Fri, 05 Jul 2019 09:15:29: 111000000 INFO @ Fri, 05 Jul 2019 09:15:30: 105000000 INFO @ Fri, 05 Jul 2019 09:15:35: 108000000 INFO @ Fri, 05 Jul 2019 09:15:39: 112000000 INFO @ Fri, 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INFO @ Fri, 05 Jul 2019 09:16:57: 120000000 INFO @ Fri, 05 Jul 2019 09:16:59: 114000000 INFO @ Fri, 05 Jul 2019 09:17:03: 117000000 INFO @ Fri, 05 Jul 2019 09:17:07: 121000000 INFO @ Fri, 05 Jul 2019 09:17:09: 115000000 INFO @ Fri, 05 Jul 2019 09:17:13: 118000000 INFO @ Fri, 05 Jul 2019 09:17:17: 122000000 INFO @ Fri, 05 Jul 2019 09:17:19: 116000000 INFO @ Fri, 05 Jul 2019 09:17:23: 119000000 INFO @ Fri, 05 Jul 2019 09:17:28: 123000000 INFO @ Fri, 05 Jul 2019 09:17:30: 117000000 INFO @ Fri, 05 Jul 2019 09:17:33: 120000000 INFO @ Fri, 05 Jul 2019 09:17:38: 124000000 INFO @ Fri, 05 Jul 2019 09:17:40: 118000000 INFO @ Fri, 05 Jul 2019 09:17:42: 121000000 INFO @ Fri, 05 Jul 2019 09:17:47: 125000000 INFO @ Fri, 05 Jul 2019 09:17:50: 119000000 INFO @ Fri, 05 Jul 2019 09:17:52: 122000000 INFO @ Fri, 05 Jul 2019 09:17:57: 126000000 INFO @ Fri, 05 Jul 2019 09:18:00: 120000000 INFO @ Fri, 05 Jul 2019 09:18:02: 123000000 INFO @ Fri, 05 Jul 2019 09:18:07: 127000000 INFO @ Fri, 05 Jul 2019 09:18:10: 121000000 INFO @ Fri, 05 Jul 2019 09:18:11: 124000000 INFO @ Fri, 05 Jul 2019 09:18:17: 128000000 INFO @ Fri, 05 Jul 2019 09:18:20: 122000000 INFO @ Fri, 05 Jul 2019 09:18:21: 125000000 INFO @ Fri, 05 Jul 2019 09:18:27: 129000000 INFO @ Fri, 05 Jul 2019 09:18:30: 123000000 INFO @ Fri, 05 Jul 2019 09:18:31: 126000000 INFO @ Fri, 05 Jul 2019 09:18:37: 130000000 INFO @ Fri, 05 Jul 2019 09:18:40: 124000000 INFO @ Fri, 05 Jul 2019 09:18:41: 127000000 INFO @ Fri, 05 Jul 2019 09:18:47: 131000000 INFO @ Fri, 05 Jul 2019 09:18:50: 125000000 INFO @ Fri, 05 Jul 2019 09:18:51: 128000000 INFO @ Fri, 05 Jul 2019 09:18:56: 132000000 INFO @ Fri, 05 Jul 2019 09:19:00: 129000000 INFO @ Fri, 05 Jul 2019 09:19:01: 126000000 INFO @ Fri, 05 Jul 2019 09:19:07: 133000000 INFO @ Fri, 05 Jul 2019 09:19:10: 130000000 INFO @ Fri, 05 Jul 2019 09:19:11: 127000000 INFO @ Fri, 05 Jul 2019 09:19:17: 134000000 INFO @ Fri, 05 Jul 2019 09:19:20: 131000000 INFO @ Fri, 05 Jul 2019 09:19:21: 128000000 INFO @ Fri, 05 Jul 2019 09:19:27: 135000000 INFO @ Fri, 05 Jul 2019 09:19:29: 132000000 INFO @ Fri, 05 Jul 2019 09:19:32: 129000000 INFO @ Fri, 05 Jul 2019 09:19:37: 136000000 INFO @ Fri, 05 Jul 2019 09:19:39: 133000000 INFO @ Fri, 05 Jul 2019 09:19:42: 130000000 INFO @ Fri, 05 Jul 2019 09:19:47: 137000000 INFO @ Fri, 05 Jul 2019 09:19:49: 134000000 INFO @ Fri, 05 Jul 2019 09:19:52: 131000000 INFO @ Fri, 05 Jul 2019 09:19:57: 138000000 INFO @ Fri, 05 Jul 2019 09:19:59: 135000000 INFO @ Fri, 05 Jul 2019 09:20:02: 132000000 INFO @ Fri, 05 Jul 2019 09:20:07: 139000000 INFO @ Fri, 05 Jul 2019 09:20:09: 136000000 INFO @ Fri, 05 Jul 2019 09:20:12: 133000000 INFO @ Fri, 05 Jul 2019 09:20:17: 140000000 INFO @ Fri, 05 Jul 2019 09:20:18: 137000000 INFO @ Fri, 05 Jul 2019 09:20:22: 134000000 INFO @ Fri, 05 Jul 2019 09:20:28: 141000000 INFO @ Fri, 05 Jul 2019 09:20:28: 138000000 INFO @ Fri, 05 Jul 2019 09:20:31: 135000000 INFO @ Fri, 05 Jul 2019 09:20:38: 142000000 INFO @ Fri, 05 Jul 2019 09:20:38: 139000000 INFO @ Fri, 05 Jul 2019 09:20:41: 136000000 INFO @ Fri, 05 Jul 2019 09:20:49: 140000000 INFO @ Fri, 05 Jul 2019 09:20:49: 143000000 INFO @ Fri, 05 Jul 2019 09:20:51: 137000000 INFO @ Fri, 05 Jul 2019 09:20:59: 141000000 INFO @ Fri, 05 Jul 2019 09:20:59: 144000000 INFO @ Fri, 05 Jul 2019 09:21:01: 138000000 INFO @ Fri, 05 Jul 2019 09:21:09: 142000000 INFO @ Fri, 05 Jul 2019 09:21:10: 145000000 INFO @ Fri, 05 Jul 2019 09:21:11: 139000000 INFO @ Fri, 05 Jul 2019 09:21:19: 143000000 INFO @ Fri, 05 Jul 2019 09:21:20: 146000000 INFO @ Fri, 05 Jul 2019 09:21:21: 140000000 INFO @ Fri, 05 Jul 2019 09:21:27: #1 tag size is determined as 50 bps INFO @ Fri, 05 Jul 2019 09:21:27: #1 tag size = 50 INFO @ Fri, 05 Jul 2019 09:21:27: #1 total tags in treatment: 146393745 INFO @ Fri, 05 Jul 2019 09:21:27: #1 user defined the maximum tags... INFO @ Fri, 05 Jul 2019 09:21:27: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Fri, 05 Jul 2019 09:21:30: 144000000 INFO @ Fri, 05 Jul 2019 09:21:31: #1 tags after filtering in treatment: 146393711 INFO @ Fri, 05 Jul 2019 09:21:31: #1 Redundant rate of treatment: 0.00 INFO @ Fri, 05 Jul 2019 09:21:31: #1 finished! INFO @ Fri, 05 Jul 2019 09:21:31: #2 Build Peak Model... INFO @ Fri, 05 Jul 2019 09:21:31: #2 looking for paired plus/minus strand peaks... INFO @ Fri, 05 Jul 2019 09:21:31: 141000000 INFO @ Fri, 05 Jul 2019 09:21:40: 145000000 INFO @ Fri, 05 Jul 2019 09:21:40: 142000000 INFO @ Fri, 05 Jul 2019 09:21:46: #2 number of paired peaks: 6824 INFO @ Fri, 05 Jul 2019 09:21:46: start model_add_line... INFO @ Fri, 05 Jul 2019 09:21:48: start X-correlation... INFO @ Fri, 05 Jul 2019 09:21:48: end of X-cor INFO @ Fri, 05 Jul 2019 09:21:48: #2 finished! INFO @ Fri, 05 Jul 2019 09:21:48: #2 predicted fragment length is 110 bps INFO @ Fri, 05 Jul 2019 09:21:48: #2 alternative fragment length(s) may be 3,110 bps INFO @ Fri, 05 Jul 2019 09:21:48: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/rn6/ERX101872/ERX101872.10_model.r INFO @ Fri, 05 Jul 2019 09:21:48: #3 Call peaks... INFO @ Fri, 05 Jul 2019 09:21:48: #3 Pre-compute pvalue-qvalue table... INFO @ Fri, 05 Jul 2019 09:21:50: 146000000 INFO @ Fri, 05 Jul 2019 09:21:50: 143000000 INFO @ Fri, 05 Jul 2019 09:21:56: #1 tag size is determined as 50 bps INFO @ Fri, 05 Jul 2019 09:21:56: #1 tag size = 50 INFO @ Fri, 05 Jul 2019 09:21:56: #1 total tags in treatment: 146393745 INFO @ Fri, 05 Jul 2019 09:21:56: #1 user defined the maximum tags... INFO @ Fri, 05 Jul 2019 09:21:56: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Fri, 05 Jul 2019 09:21:59: #1 tags after filtering in treatment: 146393711 INFO @ Fri, 05 Jul 2019 09:21:59: #1 Redundant rate of treatment: 0.00 INFO @ Fri, 05 Jul 2019 09:21:59: #1 finished! INFO @ Fri, 05 Jul 2019 09:21:59: #2 Build Peak Model... INFO @ Fri, 05 Jul 2019 09:21:59: #2 looking for paired plus/minus strand peaks... INFO @ Fri, 05 Jul 2019 09:22:00: 144000000 INFO @ Fri, 05 Jul 2019 09:22:10: 145000000 INFO @ Fri, 05 Jul 2019 09:22:14: #2 number of paired peaks: 6824 INFO @ Fri, 05 Jul 2019 09:22:14: start model_add_line... INFO @ Fri, 05 Jul 2019 09:22:16: start X-correlation... INFO @ Fri, 05 Jul 2019 09:22:16: end of X-cor INFO @ Fri, 05 Jul 2019 09:22:16: #2 finished! INFO @ Fri, 05 Jul 2019 09:22:16: #2 predicted fragment length is 110 bps INFO @ Fri, 05 Jul 2019 09:22:16: #2 alternative fragment length(s) may be 3,110 bps INFO @ Fri, 05 Jul 2019 09:22:16: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/rn6/ERX101872/ERX101872.05_model.r INFO @ Fri, 05 Jul 2019 09:22:16: #3 Call peaks... INFO @ Fri, 05 Jul 2019 09:22:16: #3 Pre-compute pvalue-qvalue table... INFO @ Fri, 05 Jul 2019 09:22:20: 146000000 INFO @ Fri, 05 Jul 2019 09:22:26: #1 tag size is determined as 50 bps INFO @ Fri, 05 Jul 2019 09:22:26: #1 tag size = 50 INFO @ Fri, 05 Jul 2019 09:22:26: #1 total tags in treatment: 146393745 INFO @ Fri, 05 Jul 2019 09:22:26: #1 user defined the maximum tags... INFO @ Fri, 05 Jul 2019 09:22:26: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Fri, 05 Jul 2019 09:22:29: #1 tags after filtering in treatment: 146393711 INFO @ Fri, 05 Jul 2019 09:22:29: #1 Redundant rate of treatment: 0.00 INFO @ Fri, 05 Jul 2019 09:22:29: #1 finished! INFO @ Fri, 05 Jul 2019 09:22:29: #2 Build Peak Model... INFO @ Fri, 05 Jul 2019 09:22:29: #2 looking for paired plus/minus strand peaks... INFO @ Fri, 05 Jul 2019 09:22:44: #2 number of paired peaks: 6824 INFO @ Fri, 05 Jul 2019 09:22:44: start model_add_line... INFO @ Fri, 05 Jul 2019 09:22:45: start X-correlation... INFO @ Fri, 05 Jul 2019 09:22:45: end of X-cor INFO @ Fri, 05 Jul 2019 09:22:45: #2 finished! INFO @ Fri, 05 Jul 2019 09:22:45: #2 predicted fragment length is 110 bps INFO @ Fri, 05 Jul 2019 09:22:45: #2 alternative fragment length(s) may be 3,110 bps INFO @ Fri, 05 Jul 2019 09:22:45: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/rn6/ERX101872/ERX101872.20_model.r INFO @ Fri, 05 Jul 2019 09:22:45: #3 Call peaks... INFO @ Fri, 05 Jul 2019 09:22:45: #3 Pre-compute pvalue-qvalue table... INFO @ Fri, 05 Jul 2019 09:29:46: #3 Call peaks for each chromosome... INFO @ Fri, 05 Jul 2019 09:30:12: #3 Call peaks for each chromosome... INFO @ Fri, 05 Jul 2019 09:30:40: #3 Call peaks for each chromosome... INFO @ Fri, 05 Jul 2019 09:34:04: #4 Write output xls file... /home/okishinya/chipatlas/results/rn6/ERX101872/ERX101872.10_peaks.xls INFO @ Fri, 05 Jul 2019 09:34:04: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/rn6/ERX101872/ERX101872.10_peaks.narrowPeak INFO @ Fri, 05 Jul 2019 09:34:04: #4 Write summits bed file... /home/okishinya/chipatlas/results/rn6/ERX101872/ERX101872.10_summits.bed INFO @ Fri, 05 Jul 2019 09:34:04: Done! pass1 - making usageList (78 chroms): 3 millis pass2 - checking and writing primary data (2756 records, 4 fields): 15 millis CompletedMACS2peakCalling INFO @ Fri, 05 Jul 2019 09:34:23: #4 Write output xls file... /home/okishinya/chipatlas/results/rn6/ERX101872/ERX101872.05_peaks.xls INFO @ Fri, 05 Jul 2019 09:34:23: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/rn6/ERX101872/ERX101872.05_peaks.narrowPeak INFO @ Fri, 05 Jul 2019 09:34:23: #4 Write summits bed file... /home/okishinya/chipatlas/results/rn6/ERX101872/ERX101872.05_summits.bed INFO @ Fri, 05 Jul 2019 09:34:23: Done! pass1 - making usageList (133 chroms): 4 millis pass2 - checking and writing primary data (12628 records, 4 fields): 28 millis CompletedMACS2peakCalling INFO @ Fri, 05 Jul 2019 09:34:52: #4 Write output xls file... /home/okishinya/chipatlas/results/rn6/ERX101872/ERX101872.20_peaks.xls INFO @ Fri, 05 Jul 2019 09:34:52: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/rn6/ERX101872/ERX101872.20_peaks.narrowPeak INFO @ Fri, 05 Jul 2019 09:34:52: #4 Write summits bed file... /home/okishinya/chipatlas/results/rn6/ERX101872/ERX101872.20_summits.bed INFO @ Fri, 05 Jul 2019 09:34:52: Done! pass1 - making usageList (48 chroms): 2 millis pass2 - checking and writing primary data (782 records, 4 fields): 10 millis CompletedMACS2peakCalling BedGraph に変換しました。 BigWig に変換中... BigWig に変換しました。