Job ID = 12237275
SRX = SRX6828473
Genome = rm6
Started at	210330_14:50:59

sra ファイルのダウンロード中...

Read layout: PAIRED


fastq に変換中...

Read 29006674 spots for SRR10096297/SRR10096297.sra
Written 29006674 spots for SRR10096297/SRR10096297.sra

fastq に変換しました。

-rw-r--r-- 1 okishinya so-ddmku 2394524673 Mar 30 14:55 SRR10096297_1.fastq.gz
-rw-r--r-- 1 okishinya so-ddmku 2542318174 Mar 30 14:55 SRR10096297_2.fastq.gz
Start BMap mapping with following parameters
 species                :R_norvegicus
 revision               :rm6
 seed offset            :0
 seed iterate           :20
 seed step              :5
 min seed hit           :2
 minimum seed length    :20
 maximum seed length    :26
 seed max hit count     :10
 minimum alignment score:150
 output summary file    :SRX6828473.sum.gz
 output alignment file  :SRX6828473.bisulalign

Loading index (FM-index)
    compression factor for suffix array is 2.
    compression factor for counter table is 32.
 -FM-index for c2t genome.... finished (elapsed: 51881 ms)
 -FM-Index for g2a genome.... finished (elapsed: 106597 ms)
 -suffix array for c2t genome.... finished (elapsed: 116351 ms)
 -suffix array for g2a genome.... finished (elapsed: 125906 ms)
 -reference sequence.... finished (elapsed: 126254 ms)
Index loading finished.
File(s) loaded: SRR10096297_1.fastq.gz, SRR10096297_2.fastq.gz.
Time elapsed:2926043 ms
mkdir: cannot create directory ‘/home/okishinya/tmpDirForFastq/SRX6828473’: File exists
=-=-=BMap	OK
-rw-r--r-- 1 okishinya so-ddmku 3452585344 Mar 30 15:49 SRX6828473.bisulalign.gz
-rw-r--r-- 1 okishinya so-ddmku  579919292 Mar 30 15:49 SRX6828473.sum.gz
SRX6828473.sum.gz was set to analysis list.
Analyzing SRX6828473.sum.gz.
=-=-=MapSum	OK
-rw-r--r-- 1 okishinya so-ddmku       4639 Mar 30 15:55 SRX6828473.mapsum.html
Processing "SRX6828473.bisulalign.gz" (3452585344 bytes)
********************************************: finished.
Start exporting ...
Finished.
=-=-=MPTC	OK
-rw-r--r-- 1 okishinya so-ddmku 22961918759 Mar 30 15:59 SRX6828473.graph
=-=-=CalcCoverage	OK
-rw-r--r-- 1 okishinya so-ddmku      557028 Mar 30 16:05 SRX6828473.stat.html
BinSeq                  :/lustre7/home/lustre4/okishinya/chipatlas/bin/Revisions/R_norvegicus/rm6/R_norvegicus_rm6.binseq
GraphFile               :SRX6828473.graph
Output File (methyl)    :SRX6828473.cpg.methyl.bedGraph.gz
Output File (cover)    :SRX6828473.cpg.cover.bedGraph.gz
Output File (tab)    :/dev/null
Output File (methpipe)    :SRX6828473.cpg.methpipe.tab.gz

=-=-=MethExport	OK
-rw-r--r-- 1 okishinya so-ddmku   223941233 Mar 30 16:19 SRX6828473.cpg.cover.bedGraph.gz
-rw-r--r-- 1 okishinya so-ddmku    92290032 Mar 30 16:19 SRX6828473.cpg.methpipe.tab.gz
-rw-r--r-- 1 okishinya so-ddmku   242932925 Mar 30 16:19 SRX6828473.cpg.methyl.bedGraph.gz
=-=-=bmap_sum	OK
=-=-=hypo- hyper-me-region	OK
-rw-r--r-- 1 okishinya so-ddmku    975798 Mar 30 16:46 SRX6828473.hmr
-rw-r--r-- 1 okishinya so-ddmku     42282 Mar 30 16:46 SRX6828473.pmd
-rw-r--r-- 1 okishinya so-ddmku   7817924 Mar 30 16:46 SRX6828473.hypermr
=-=-=BigWig	OK
-rw-r--r-- 1 okishinya so-ddmku 154850713 Mar 30 16:50 SRX6828473.cpg.cover.bw
-rw-r--r-- 1 okishinya so-ddmku 130283173 Mar 30 16:48 SRX6828473.cpg.methyl.bw

=-=-=num_reads	29006674
=-=-=mapping_rate_1	0.813
=-=-=mapping_rate_2	0.801
=-=-=methyl_rate_cpg_total	0.712
=-=-=methyl_rate_cpg_lambda	0
=-=-=low_methyl_region	40736
=-=-=partial_methyl_region	1749
=-=-=high_methyl_region	327663
=-=-=coverage	0.819059
=-=-=end	210330_16:51:13
=-=-=duration	2.003