Job ID = 12237283
SRX = SRX6828472
Genome = rm6
Started at	210330_14:50:59

sra ファイルのダウンロード中...

Read layout: PAIRED


fastq に変換中...

Read 31785803 spots for SRR10096296/SRR10096296.sra
Written 31785803 spots for SRR10096296/SRR10096296.sra

fastq に変換しました。

-rw-r--r-- 1 okishinya so-ddmku 2663981070 Mar 30 14:55 SRR10096296_1.fastq.gz
-rw-r--r-- 1 okishinya so-ddmku 2844580602 Mar 30 14:55 SRR10096296_2.fastq.gz
Start BMap mapping with following parameters
 species                :R_norvegicus
 revision               :rm6
 seed offset            :0
 seed iterate           :20
 seed step              :5
 min seed hit           :2
 minimum seed length    :20
 maximum seed length    :26
 seed max hit count     :10
 minimum alignment score:150
 output summary file    :SRX6828472.sum.gz
 output alignment file  :SRX6828472.bisulalign

Loading index (FM-index)
    compression factor for suffix array is 2.
    compression factor for counter table is 32.
 -FM-index for c2t genome.... finished (elapsed: 51672 ms)
 -FM-Index for g2a genome.... finished (elapsed: 106259 ms)
 -suffix array for c2t genome.... finished (elapsed: 119043 ms)
 -suffix array for g2a genome.... finished (elapsed: 136223 ms)
 -reference sequence.... finished (elapsed: 137427 ms)
Index loading finished.
File(s) loaded: SRR10096296_1.fastq.gz, SRR10096296_2.fastq.gz.
Time elapsed:3121575 ms
mkdir: cannot create directory ‘/home/okishinya/tmpDirForFastq/SRX6828472’: File exists
=-=-=BMap	OK
-rw-r--r-- 1 okishinya so-ddmku 4130034664 Mar 30 15:54 SRX6828472.bisulalign.gz
-rw-r--r-- 1 okishinya so-ddmku  646326297 Mar 30 15:54 SRX6828472.sum.gz
SRX6828472.sum.gz was set to analysis list.
Analyzing SRX6828472.sum.gz.
=-=-=MapSum	OK
-rw-r--r-- 1 okishinya so-ddmku       4624 Mar 30 16:00 SRX6828472.mapsum.html
Processing "SRX6828472.bisulalign.gz" (4130034664 bytes)
*****************: finished.
Start exporting ...
Finished.
=-=-=MPTC	OK
-rw-r--r-- 1 okishinya so-ddmku 22961918759 Mar 30 16:05 SRX6828472.graph
=-=-=CalcCoverage	OK
-rw-r--r-- 1 okishinya so-ddmku      557225 Mar 30 16:12 SRX6828472.stat.html
BinSeq                  :/lustre7/home/lustre4/okishinya/chipatlas/bin/Revisions/R_norvegicus/rm6/R_norvegicus_rm6.binseq
GraphFile               :SRX6828472.graph
Output File (methyl)    :SRX6828472.cpg.methyl.bedGraph.gz
Output File (cover)    :SRX6828472.cpg.cover.bedGraph.gz
Output File (tab)    :/dev/null
Output File (methpipe)    :SRX6828472.cpg.methpipe.tab.gz

=-=-=MethExport	OK
-rw-r--r-- 1 okishinya so-ddmku   224162612 Mar 30 16:25 SRX6828472.cpg.cover.bedGraph.gz
-rw-r--r-- 1 okishinya so-ddmku    99828973 Mar 30 16:25 SRX6828472.cpg.methpipe.tab.gz
-rw-r--r-- 1 okishinya so-ddmku   245385562 Mar 30 16:25 SRX6828472.cpg.methyl.bedGraph.gz
=-=-=bmap_sum	OK
=-=-=hypo- hyper-me-region	OK
-rw-r--r-- 1 okishinya so-ddmku   1085133 Mar 30 16:54 SRX6828472.hmr
-rw-r--r-- 1 okishinya so-ddmku     38455 Mar 30 16:54 SRX6828472.pmd
-rw-r--r-- 1 okishinya so-ddmku   7529554 Mar 30 16:54 SRX6828472.hypermr
=-=-=BigWig	OK
-rw-r--r-- 1 okishinya so-ddmku 164324934 Mar 30 16:58 SRX6828472.cpg.cover.bw
-rw-r--r-- 1 okishinya so-ddmku 139013957 Mar 30 16:56 SRX6828472.cpg.methyl.bw

=-=-=num_reads	31785803
=-=-=mapping_rate_1	0.829
=-=-=mapping_rate_2	0.814
=-=-=methyl_rate_cpg_total	0.71
=-=-=methyl_rate_cpg_lambda	-
=-=-=low_methyl_region	45304
=-=-=partial_methyl_region	1593
=-=-=high_methyl_region	315488
=-=-=coverage	0.94164
=-=-=end	210330_16:58:52
=-=-=duration	2.131