Job ID = 12237284
SRX = SRX6828471
Genome = rm6
Started at	210330_14:51:14

sra ファイルのダウンロード中...

Read layout: PAIRED


fastq に変換中...

Read 31978877 spots for SRR10096295/SRR10096295.sra
Written 31978877 spots for SRR10096295/SRR10096295.sra

fastq に変換しました。

-rw-r--r-- 1 okishinya so-ddmku 2619128891 Mar 30 14:55 SRR10096295_1.fastq.gz
-rw-r--r-- 1 okishinya so-ddmku 2781072693 Mar 30 14:55 SRR10096295_2.fastq.gz
Start BMap mapping with following parameters
 species                :R_norvegicus
 revision               :rm6
 seed offset            :0
 seed iterate           :20
 seed step              :5
 min seed hit           :2
 minimum seed length    :20
 maximum seed length    :26
 seed max hit count     :10
 minimum alignment score:150
 output summary file    :SRX6828471.sum.gz
 output alignment file  :SRX6828471.bisulalign

Loading index (FM-index)
    compression factor for suffix array is 2.
    compression factor for counter table is 32.
 -FM-index for c2t genome.... finished (elapsed: 52820 ms)
 -FM-Index for g2a genome.... finished (elapsed: 108396 ms)
 -suffix array for c2t genome.... finished (elapsed: 126239 ms)
 -suffix array for g2a genome.... finished (elapsed: 143673 ms)
 -reference sequence.... finished (elapsed: 145019 ms)
Index loading finished.
File(s) loaded: SRR10096295_1.fastq.gz, SRR10096295_2.fastq.gz.
Time elapsed:2997664 ms
mkdir: cannot create directory ‘/home/okishinya/tmpDirForFastq/SRX6828471’: File exists
=-=-=BMap	OK
-rw-r--r-- 1 okishinya so-ddmku 3692318567 Mar 30 15:51 SRX6828471.bisulalign.gz
-rw-r--r-- 1 okishinya so-ddmku  640430011 Mar 30 15:51 SRX6828471.sum.gz
SRX6828471.sum.gz was set to analysis list.
Analyzing SRX6828471.sum.gz.
=-=-=MapSum	OK
-rw-r--r-- 1 okishinya so-ddmku       4703 Mar 30 15:58 SRX6828471.mapsum.html
Processing "SRX6828471.bisulalign.gz" (3692318567 bytes)
**********************************************: finished.
Start exporting ...
Finished.
=-=-=MPTC	OK
-rw-r--r-- 1 okishinya so-ddmku 22961918759 Mar 30 16:01 SRX6828471.graph
=-=-=CalcCoverage	OK
-rw-r--r-- 1 okishinya so-ddmku      557209 Mar 30 16:08 SRX6828471.stat.html
BinSeq                  :/lustre7/home/lustre4/okishinya/chipatlas/bin/Revisions/R_norvegicus/rm6/R_norvegicus_rm6.binseq
GraphFile               :SRX6828471.graph
Output File (methyl)    :SRX6828471.cpg.methyl.bedGraph.gz
Output File (cover)    :SRX6828471.cpg.cover.bedGraph.gz
Output File (tab)    :/dev/null
Output File (methpipe)    :SRX6828471.cpg.methpipe.tab.gz

=-=-=MethExport	OK
-rw-r--r-- 1 okishinya so-ddmku   224120802 Mar 30 16:21 SRX6828471.cpg.cover.bedGraph.gz
-rw-r--r-- 1 okishinya so-ddmku    95183342 Mar 30 16:21 SRX6828471.cpg.methpipe.tab.gz
-rw-r--r-- 1 okishinya so-ddmku   243810771 Mar 30 16:21 SRX6828471.cpg.methyl.bedGraph.gz
=-=-=bmap_sum	OK
=-=-=hypo- hyper-me-region	OK
-rw-r--r-- 1 okishinya so-ddmku   1004788 Mar 30 16:49 SRX6828471.hmr
-rw-r--r-- 1 okishinya so-ddmku     43589 Mar 30 16:49 SRX6828471.pmd
-rw-r--r-- 1 okishinya so-ddmku   7688058 Mar 30 16:49 SRX6828471.hypermr
=-=-=BigWig	OK
-rw-r--r-- 1 okishinya so-ddmku 158919152 Mar 30 16:53 SRX6828471.cpg.cover.bw
-rw-r--r-- 1 okishinya so-ddmku 133764702 Mar 30 16:51 SRX6828471.cpg.methyl.bw

=-=-=num_reads	31978876
=-=-=mapping_rate_1	0.814
=-=-=mapping_rate_2	0.803
=-=-=methyl_rate_cpg_total	0.713
=-=-=methyl_rate_cpg_lambda	-
=-=-=low_methyl_region	41945
=-=-=partial_methyl_region	1805
=-=-=high_methyl_region	322229
=-=-=coverage	0.862233
=-=-=end	210330_16:54:03
=-=-=duration	2.046