Job ID = 12237252
SRX = SRX6828470
Genome = rm6
Started at	210330_14:50:46

sra ファイルのダウンロード中...

Read layout: PAIRED


fastq に変換中...

Read 23739330 spots for SRR10096294/SRR10096294.sra
Written 23739330 spots for SRR10096294/SRR10096294.sra

fastq に変換しました。

-rw-r--r-- 1 okishinya so-ddmku 1969496103 Mar 30 14:54 SRR10096294_1.fastq.gz
-rw-r--r-- 1 okishinya so-ddmku 2086655355 Mar 30 14:54 SRR10096294_2.fastq.gz
Start BMap mapping with following parameters
 species                :R_norvegicus
 revision               :rm6
 seed offset            :0
 seed iterate           :20
 seed step              :5
 min seed hit           :2
 minimum seed length    :20
 maximum seed length    :26
 seed max hit count     :10
 minimum alignment score:150
 output summary file    :SRX6828470.sum.gz
 output alignment file  :SRX6828470.bisulalign

Loading index (FM-index)
    compression factor for suffix array is 2.
    compression factor for counter table is 32.
 -FM-index for c2t genome.... finished (elapsed: 53551 ms)
 -FM-Index for g2a genome.... finished (elapsed: 109500 ms)
 -suffix array for c2t genome.... finished (elapsed: 121930 ms)
 -suffix array for g2a genome.... finished (elapsed: 133990 ms)
 -reference sequence.... finished (elapsed: 134369 ms)
Index loading finished.
File(s) loaded: SRR10096294_1.fastq.gz, SRR10096294_2.fastq.gz.
Time elapsed:2758711 ms
mkdir: cannot create directory ‘/home/okishinya/tmpDirForFastq/SRX6828470’: File exists
=-=-=BMap	OK
-rw-r--r-- 1 okishinya so-ddmku 2759145292 Mar 30 15:44 SRX6828470.bisulalign.gz
-rw-r--r-- 1 okishinya so-ddmku  468960850 Mar 30 15:44 SRX6828470.sum.gz
SRX6828470.sum.gz was set to analysis list.
Analyzing SRX6828470.sum.gz.
=-=-=MapSum	OK
-rw-r--r-- 1 okishinya so-ddmku       4632 Mar 30 15:49 SRX6828470.mapsum.html
Processing "SRX6828470.bisulalign.gz" (2759145292 bytes)
********************: finished.
Start exporting ...
Finished.
=-=-=MPTC	OK
-rw-r--r-- 1 okishinya so-ddmku 22961918759 Mar 30 15:53 SRX6828470.graph
=-=-=CalcCoverage	OK
-rw-r--r-- 1 okishinya so-ddmku      556929 Mar 30 15:59 SRX6828470.stat.html
BinSeq                  :/lustre7/home/lustre4/okishinya/chipatlas/bin/Revisions/R_norvegicus/rm6/R_norvegicus_rm6.binseq
GraphFile               :SRX6828470.graph
Output File (methyl)    :SRX6828470.cpg.methyl.bedGraph.gz
Output File (cover)    :SRX6828470.cpg.cover.bedGraph.gz
Output File (tab)    :/dev/null
Output File (methpipe)    :SRX6828470.cpg.methpipe.tab.gz

=-=-=MethExport	OK
-rw-r--r-- 1 okishinya so-ddmku   223547506 Mar 30 16:13 SRX6828470.cpg.cover.bedGraph.gz
-rw-r--r-- 1 okishinya so-ddmku    80390831 Mar 30 16:13 SRX6828470.cpg.methpipe.tab.gz
-rw-r--r-- 1 okishinya so-ddmku   240135991 Mar 30 16:13 SRX6828470.cpg.methyl.bedGraph.gz
=-=-=bmap_sum	OK
=-=-=hypo- hyper-me-region	OK
-rw-r--r-- 1 okishinya so-ddmku    871177 Mar 30 16:38 SRX6828470.hmr
-rw-r--r-- 1 okishinya so-ddmku     39105 Mar 30 16:38 SRX6828470.pmd
-rw-r--r-- 1 okishinya so-ddmku   8108103 Mar 30 16:38 SRX6828470.hypermr
=-=-=BigWig	OK
-rw-r--r-- 1 okishinya so-ddmku 139193470 Mar 30 16:42 SRX6828470.cpg.cover.bw
-rw-r--r-- 1 okishinya so-ddmku  90844904 Mar 30 16:40 SRX6828470.cpg.methyl.bw

=-=-=num_reads	23739330
=-=-=mapping_rate_1	0.801
=-=-=mapping_rate_2	0.79
=-=-=methyl_rate_cpg_total	0.71
=-=-=methyl_rate_cpg_lambda	-
=-=-=low_methyl_region	36370
=-=-=partial_methyl_region	1630
=-=-=high_methyl_region	339856
=-=-=coverage	0.645067
=-=-=end	210330_16:43:00
=-=-=duration	1.870