Job ID = 12237268
SRX = SRX6828469
Genome = rm6
Started at	210330_14:50:44

sra ファイルのダウンロード中...

Read layout: PAIRED


fastq に変換中...

Read 27664003 spots for SRR10096293/SRR10096293.sra
Written 27664003 spots for SRR10096293/SRR10096293.sra

fastq に変換しました。

-rw-r--r-- 1 okishinya so-ddmku 2289832811 Mar 30 14:55 SRR10096293_1.fastq.gz
-rw-r--r-- 1 okishinya so-ddmku 2430963641 Mar 30 14:55 SRR10096293_2.fastq.gz
Start BMap mapping with following parameters
 species                :R_norvegicus
 revision               :rm6
 seed offset            :0
 seed iterate           :20
 seed step              :5
 min seed hit           :2
 minimum seed length    :20
 maximum seed length    :26
 seed max hit count     :10
 minimum alignment score:150
 output summary file    :SRX6828469.sum.gz
 output alignment file  :SRX6828469.bisulalign

Loading index (FM-index)
    compression factor for suffix array is 2.
    compression factor for counter table is 32.
 -FM-index for c2t genome.... finished (elapsed: 53515 ms)
 -FM-Index for g2a genome.... finished (elapsed: 109434 ms)
 -suffix array for c2t genome.... finished (elapsed: 121760 ms)
 -suffix array for g2a genome.... finished (elapsed: 133590 ms)
 -reference sequence.... finished (elapsed: 134142 ms)
Index loading finished.
File(s) loaded: SRR10096293_1.fastq.gz, SRR10096293_2.fastq.gz.
Time elapsed:3654083 ms
mkdir: cannot create directory ‘/home/okishinya/tmpDirForFastq/SRX6828469’: File exists
=-=-=BMap	OK
-rw-r--r-- 1 okishinya so-ddmku 3245415200 Mar 30 16:01 SRX6828469.bisulalign.gz
-rw-r--r-- 1 okishinya so-ddmku  548336439 Mar 30 16:01 SRX6828469.sum.gz
SRX6828469.sum.gz was set to analysis list.
Analyzing SRX6828469.sum.gz.
=-=-=MapSum	OK
-rw-r--r-- 1 okishinya so-ddmku       4878 Mar 30 16:06 SRX6828469.mapsum.html
Processing "SRX6828469.bisulalign.gz" (3245415200 bytes)
***************************************: finished.
Start exporting ...
Finished.
=-=-=MPTC	OK
-rw-r--r-- 1 okishinya so-ddmku 22961918759 Mar 30 16:10 SRX6828469.graph
=-=-=CalcCoverage	OK
-rw-r--r-- 1 okishinya so-ddmku      557041 Mar 30 16:17 SRX6828469.stat.html
BinSeq                  :/lustre7/home/lustre4/okishinya/chipatlas/bin/Revisions/R_norvegicus/rm6/R_norvegicus_rm6.binseq
GraphFile               :SRX6828469.graph
Output File (methyl)    :SRX6828469.cpg.methyl.bedGraph.gz
Output File (cover)    :SRX6828469.cpg.cover.bedGraph.gz
Output File (tab)    :/dev/null
Output File (methpipe)    :SRX6828469.cpg.methpipe.tab.gz

=-=-=MethExport	OK
-rw-r--r-- 1 okishinya so-ddmku   223850860 Mar 30 16:31 SRX6828469.cpg.cover.bedGraph.gz
-rw-r--r-- 1 okishinya so-ddmku    89286609 Mar 30 16:31 SRX6828469.cpg.methpipe.tab.gz
-rw-r--r-- 1 okishinya so-ddmku   241911110 Mar 30 16:31 SRX6828469.cpg.methyl.bedGraph.gz
=-=-=bmap_sum	OK
=-=-=hypo- hyper-me-region	OK
-rw-r--r-- 1 okishinya so-ddmku   1000729 Mar 30 16:58 SRX6828469.hmr
-rw-r--r-- 1 okishinya so-ddmku     38609 Mar 30 16:58 SRX6828469.pmd
-rw-r--r-- 1 okishinya so-ddmku   8031032 Mar 30 16:58 SRX6828469.hypermr
=-=-=BigWig	OK
-rw-r--r-- 1 okishinya so-ddmku 150954886 Mar 30 17:03 SRX6828469.cpg.cover.bw
-rw-r--r-- 1 okishinya so-ddmku 126513439 Mar 30 17:00 SRX6828469.cpg.methyl.bw

=-=-=num_reads	27664002
=-=-=mapping_rate_1	0.804
=-=-=mapping_rate_2	0.792
=-=-=methyl_rate_cpg_total	0.721
=-=-=methyl_rate_cpg_lambda	-
=-=-=low_methyl_region	41793
=-=-=partial_methyl_region	1595
=-=-=high_methyl_region	336567
=-=-=coverage	0.773655
=-=-=end	210330_17:03:15
=-=-=duration	2.208