Job ID = 12237280
SRX = SRX6828468
Genome = rm6
Started at	210330_14:50:59

sra ファイルのダウンロード中...

Read layout: PAIRED


fastq に変換中...

Read 31264764 spots for SRR10096292/SRR10096292.sra
Written 31264764 spots for SRR10096292/SRR10096292.sra

fastq に変換しました。

-rw-r--r-- 1 okishinya so-ddmku 2588653833 Mar 30 14:55 SRR10096292_1.fastq.gz
-rw-r--r-- 1 okishinya so-ddmku 2740340675 Mar 30 14:55 SRR10096292_2.fastq.gz
Start BMap mapping with following parameters
 species                :R_norvegicus
 revision               :rm6
 seed offset            :0
 seed iterate           :20
 seed step              :5
 min seed hit           :2
 minimum seed length    :20
 maximum seed length    :26
 seed max hit count     :10
 minimum alignment score:150
 output summary file    :SRX6828468.sum.gz
 output alignment file  :SRX6828468.bisulalign

Loading index (FM-index)
    compression factor for suffix array is 2.
    compression factor for counter table is 32.
 -FM-index for c2t genome.... finished (elapsed: 51662 ms)
 -FM-Index for g2a genome.... finished (elapsed: 106623 ms)
 -suffix array for c2t genome.... finished (elapsed: 119631 ms)
 -suffix array for g2a genome.... finished (elapsed: 137015 ms)
 -reference sequence.... finished (elapsed: 138296 ms)
Index loading finished.
File(s) loaded: SRR10096292_1.fastq.gz, SRR10096292_2.fastq.gz.
Time elapsed:3609837 ms
mkdir: cannot create directory ‘/home/okishinya/tmpDirForFastq/SRX6828468’: File exists
=-=-=BMap	OK
-rw-r--r-- 1 okishinya so-ddmku 3624769054 Mar 30 16:01 SRX6828468.bisulalign.gz
-rw-r--r-- 1 okishinya so-ddmku  620028929 Mar 30 16:01 SRX6828468.sum.gz
SRX6828468.sum.gz was set to analysis list.
Analyzing SRX6828468.sum.gz.
=-=-=MapSum	OK
-rw-r--r-- 1 okishinya so-ddmku       4454 Mar 30 16:07 SRX6828468.mapsum.html
Processing "SRX6828468.bisulalign.gz" (3624769054 bytes)
*************************************************: finished.
Start exporting ...
Finished.
=-=-=MPTC	OK
-rw-r--r-- 1 okishinya so-ddmku 22961918759 Mar 30 16:12 SRX6828468.graph
=-=-=CalcCoverage	OK
-rw-r--r-- 1 okishinya so-ddmku      557182 Mar 30 16:19 SRX6828468.stat.html
BinSeq                  :/lustre7/home/lustre4/okishinya/chipatlas/bin/Revisions/R_norvegicus/rm6/R_norvegicus_rm6.binseq
GraphFile               :SRX6828468.graph
Output File (methyl)    :SRX6828468.cpg.methyl.bedGraph.gz
Output File (cover)    :SRX6828468.cpg.cover.bedGraph.gz
Output File (tab)    :/dev/null
Output File (methpipe)    :SRX6828468.cpg.methpipe.tab.gz

=-=-=MethExport	OK
-rw-r--r-- 1 okishinya so-ddmku   224018701 Mar 30 16:32 SRX6828468.cpg.cover.bedGraph.gz
-rw-r--r-- 1 okishinya so-ddmku    95818513 Mar 30 16:32 SRX6828468.cpg.methpipe.tab.gz
-rw-r--r-- 1 okishinya so-ddmku   243531759 Mar 30 16:32 SRX6828468.cpg.methyl.bedGraph.gz
=-=-=bmap_sum	OK
=-=-=hypo- hyper-me-region	OK
-rw-r--r-- 1 okishinya so-ddmku    990852 Mar 30 17:10 SRX6828468.hmr
-rw-r--r-- 1 okishinya so-ddmku     32728 Mar 30 17:10 SRX6828468.pmd
-rw-r--r-- 1 okishinya so-ddmku   8012654 Mar 30 17:10 SRX6828468.hypermr
=-=-=BigWig	OK
-rw-r--r-- 1 okishinya so-ddmku 159119122 Mar 30 17:14 SRX6828468.cpg.cover.bw
-rw-r--r-- 1 okishinya so-ddmku 133410981 Mar 30 17:12 SRX6828468.cpg.methyl.bw

=-=-=num_reads	31264764
=-=-=mapping_rate_1	0.803
=-=-=mapping_rate_2	0.793
=-=-=methyl_rate_cpg_total	0.705
=-=-=methyl_rate_cpg_lambda	-
=-=-=low_methyl_region	41359
=-=-=partial_methyl_region	1356
=-=-=high_methyl_region	335742
=-=-=coverage	0.871577
=-=-=end	210330_17:14:55
=-=-=duration	2.398