Job ID = 12237286
SRX = SRX6828467
Genome = rm6
Started at	210330_14:51:14

sra ファイルのダウンロード中...

Read layout: PAIRED


fastq に変換中...

Read 32106949 spots for SRR10096291/SRR10096291.sra
Written 32106949 spots for SRR10096291/SRR10096291.sra

fastq に変換しました。

-rw-r--r-- 1 okishinya so-ddmku 2675196131 Mar 30 14:56 SRR10096291_1.fastq.gz
-rw-r--r-- 1 okishinya so-ddmku 2847178260 Mar 30 14:56 SRR10096291_2.fastq.gz
Start BMap mapping with following parameters
 species                :R_norvegicus
 revision               :rm6
 seed offset            :0
 seed iterate           :20
 seed step              :5
 min seed hit           :2
 minimum seed length    :20
 maximum seed length    :26
 seed max hit count     :10
 minimum alignment score:150
 output summary file    :SRX6828467.sum.gz
 output alignment file  :SRX6828467.bisulalign

Loading index (FM-index)
    compression factor for suffix array is 2.
    compression factor for counter table is 32.
 -FM-index for c2t genome.... finished (elapsed: 52873 ms)
 -FM-Index for g2a genome.... finished (elapsed: 108389 ms)
 -suffix array for c2t genome.... finished (elapsed: 126356 ms)
 -suffix array for g2a genome.... finished (elapsed: 143934 ms)
 -reference sequence.... finished (elapsed: 145291 ms)
Index loading finished.
File(s) loaded: SRR10096291_1.fastq.gz, SRR10096291_2.fastq.gz.
Time elapsed:4352859 ms
mkdir: cannot create directory ‘/home/okishinya/tmpDirForFastq/SRX6828467’: File exists
=-=-=BMap	OK
-rw-r--r-- 1 okishinya so-ddmku 3980181660 Mar 30 16:14 SRX6828467.bisulalign.gz
-rw-r--r-- 1 okishinya so-ddmku  644384265 Mar 30 16:14 SRX6828467.sum.gz
SRX6828467.sum.gz was set to analysis list.
Analyzing SRX6828467.sum.gz.
=-=-=MapSum	OK
-rw-r--r-- 1 okishinya so-ddmku       4901 Mar 30 16:21 SRX6828467.mapsum.html
Processing "SRX6828467.bisulalign.gz" (3980181660 bytes)
************************************************: finished.
Start exporting ...
Finished.
=-=-=MPTC	OK
-rw-r--r-- 1 okishinya so-ddmku 22961918759 Mar 30 16:25 SRX6828467.graph
=-=-=CalcCoverage	OK
-rw-r--r-- 1 okishinya so-ddmku      557222 Mar 30 16:32 SRX6828467.stat.html
BinSeq                  :/lustre7/home/lustre4/okishinya/chipatlas/bin/Revisions/R_norvegicus/rm6/R_norvegicus_rm6.binseq
GraphFile               :SRX6828467.graph
Output File (methyl)    :SRX6828467.cpg.methyl.bedGraph.gz
Output File (cover)    :SRX6828467.cpg.cover.bedGraph.gz
Output File (tab)    :/dev/null
Output File (methpipe)    :SRX6828467.cpg.methpipe.tab.gz

=-=-=MethExport	OK
-rw-r--r-- 1 okishinya so-ddmku   224373347 Mar 30 16:46 SRX6828467.cpg.cover.bedGraph.gz
-rw-r--r-- 1 okishinya so-ddmku    99995688 Mar 30 16:46 SRX6828467.cpg.methpipe.tab.gz
-rw-r--r-- 1 okishinya so-ddmku   244059149 Mar 30 16:46 SRX6828467.cpg.methyl.bedGraph.gz
=-=-=bmap_sum	OK
=-=-=hypo- hyper-me-region	OK
-rw-r--r-- 1 okishinya so-ddmku    963411 Mar 30 17:26 SRX6828467.hmr
-rw-r--r-- 1 okishinya so-ddmku     37312 Mar 30 17:26 SRX6828467.pmd
-rw-r--r-- 1 okishinya so-ddmku   7868795 Mar 30 17:26 SRX6828467.hypermr
=-=-=BigWig	OK
-rw-r--r-- 1 okishinya so-ddmku 165309216 Mar 30 17:31 SRX6828467.cpg.cover.bw
-rw-r--r-- 1 okishinya so-ddmku 139552862 Mar 30 17:29 SRX6828467.cpg.methyl.bw

=-=-=num_reads	32106947
=-=-=mapping_rate_1	0.819
=-=-=mapping_rate_2	0.806
=-=-=methyl_rate_cpg_total	0.728
=-=-=methyl_rate_cpg_lambda	-
=-=-=low_methyl_region	40225
=-=-=partial_methyl_region	1565
=-=-=high_methyl_region	326527
=-=-=coverage	0.930667
=-=-=end	210330_17:31:53
=-=-=duration	2.677