Job ID = 12237256
SRX = SRX6828466
Genome = rm6
Started at	210330_14:50:44

sra ファイルのダウンロード中...

Read layout: PAIRED


fastq に変換中...

Read 24383091 spots for SRR10096290/SRR10096290.sra
Written 24383091 spots for SRR10096290/SRR10096290.sra

fastq に変換しました。

-rw-r--r-- 1 okishinya so-ddmku 2024946814 Mar 30 14:54 SRR10096290_1.fastq.gz
-rw-r--r-- 1 okishinya so-ddmku 2154040059 Mar 30 14:54 SRR10096290_2.fastq.gz
Start BMap mapping with following parameters
 species                :R_norvegicus
 revision               :rm6
 seed offset            :0
 seed iterate           :20
 seed step              :5
 min seed hit           :2
 minimum seed length    :20
 maximum seed length    :26
 seed max hit count     :10
 minimum alignment score:150
 output summary file    :SRX6828466.sum.gz
 output alignment file  :SRX6828466.bisulalign

Loading index (FM-index)
    compression factor for suffix array is 2.
    compression factor for counter table is 32.
 -FM-index for c2t genome.... finished (elapsed: 51858 ms)
 -FM-Index for g2a genome.... finished (elapsed: 106611 ms)
 -suffix array for c2t genome.... finished (elapsed: 116984 ms)
 -suffix array for g2a genome.... finished (elapsed: 127303 ms)
 -reference sequence.... finished (elapsed: 127714 ms)
Index loading finished.
File(s) loaded: SRR10096290_1.fastq.gz, SRR10096290_2.fastq.gz.
Time elapsed:2387523 ms
mkdir: cannot create directory ‘/home/okishinya/tmpDirForFastq/SRX6828466’: File exists
=-=-=BMap	OK
-rw-r--r-- 1 okishinya so-ddmku 2923801311 Mar 30 15:38 SRX6828466.bisulalign.gz
-rw-r--r-- 1 okishinya so-ddmku  484533290 Mar 30 15:38 SRX6828466.sum.gz
SRX6828466.sum.gz was set to analysis list.
Analyzing SRX6828466.sum.gz.
=-=-=MapSum	OK
-rw-r--r-- 1 okishinya so-ddmku       5175 Mar 30 15:43 SRX6828466.mapsum.html
Processing "SRX6828466.bisulalign.gz" (2923801311 bytes)
**************: finished.
Start exporting ...
Finished.
=-=-=MPTC	OK
-rw-r--r-- 1 okishinya so-ddmku 22961918759 Mar 30 15:47 SRX6828466.graph
=-=-=CalcCoverage	OK
-rw-r--r-- 1 okishinya so-ddmku      556890 Mar 30 15:53 SRX6828466.stat.html
BinSeq                  :/lustre7/home/lustre4/okishinya/chipatlas/bin/Revisions/R_norvegicus/rm6/R_norvegicus_rm6.binseq
GraphFile               :SRX6828466.graph
Output File (methyl)    :SRX6828466.cpg.methyl.bedGraph.gz
Output File (cover)    :SRX6828466.cpg.cover.bedGraph.gz
Output File (tab)    :/dev/null
Output File (methpipe)    :SRX6828466.cpg.methpipe.tab.gz

=-=-=MethExport	OK
-rw-r--r-- 1 okishinya so-ddmku   223642244 Mar 30 16:07 SRX6828466.cpg.cover.bedGraph.gz
-rw-r--r-- 1 okishinya so-ddmku    83411679 Mar 30 16:07 SRX6828466.cpg.methpipe.tab.gz
-rw-r--r-- 1 okishinya so-ddmku   240431795 Mar 30 16:07 SRX6828466.cpg.methyl.bedGraph.gz
=-=-=bmap_sum	OK
=-=-=hypo- hyper-me-region	OK
-rw-r--r-- 1 okishinya so-ddmku   1024740 Mar 30 16:34 SRX6828466.hmr
-rw-r--r-- 1 okishinya so-ddmku     40387 Mar 30 16:34 SRX6828466.pmd
-rw-r--r-- 1 okishinya so-ddmku   8162107 Mar 30 16:34 SRX6828466.hypermr
=-=-=BigWig	OK
-rw-r--r-- 1 okishinya so-ddmku 143310524 Mar 30 16:38 SRX6828466.cpg.cover.bw
-rw-r--r-- 1 okishinya so-ddmku  94197376 Mar 30 16:36 SRX6828466.cpg.methyl.bw

=-=-=num_reads	24383090
=-=-=mapping_rate_1	0.807
=-=-=mapping_rate_2	0.795
=-=-=methyl_rate_cpg_total	0.72
=-=-=methyl_rate_cpg_lambda	-
=-=-=low_methyl_region	42768
=-=-=partial_methyl_region	1673
=-=-=high_methyl_region	342112
=-=-=coverage	0.682691
=-=-=end	210330_16:38:20
=-=-=duration	1.793