Job ID = 12237282
SRX = SRX6828465
Genome = rm6
Started at	210330_14:50:59

sra ファイルのダウンロード中...

Read layout: PAIRED


fastq に変換中...

Read 31476958 spots for SRR10096289/SRR10096289.sra
Written 31476958 spots for SRR10096289/SRR10096289.sra

fastq に変換しました。

-rw-r--r-- 1 okishinya so-ddmku 2634463725 Mar 30 14:55 SRR10096289_1.fastq.gz
-rw-r--r-- 1 okishinya so-ddmku 2797497864 Mar 30 14:55 SRR10096289_2.fastq.gz
Start BMap mapping with following parameters
 species                :R_norvegicus
 revision               :rm6
 seed offset            :0
 seed iterate           :20
 seed step              :5
 min seed hit           :2
 minimum seed length    :20
 maximum seed length    :26
 seed max hit count     :10
 minimum alignment score:150
 output summary file    :SRX6828465.sum.gz
 output alignment file  :SRX6828465.bisulalign

Loading index (FM-index)
    compression factor for suffix array is 2.
    compression factor for counter table is 32.
 -FM-index for c2t genome.... finished (elapsed: 53369 ms)
 -FM-Index for g2a genome.... finished (elapsed: 109424 ms)
 -suffix array for c2t genome.... finished (elapsed: 121910 ms)
 -suffix array for g2a genome.... finished (elapsed: 133665 ms)
 -reference sequence.... finished (elapsed: 134036 ms)
Index loading finished.
File(s) loaded: SRR10096289_1.fastq.gz, SRR10096289_2.fastq.gz.
Time elapsed:4012818 ms
mkdir: cannot create directory ‘/home/okishinya/tmpDirForFastq/SRX6828465’: File exists
=-=-=BMap	OK
-rw-r--r-- 1 okishinya so-ddmku 3856249189 Mar 30 16:08 SRX6828465.bisulalign.gz
-rw-r--r-- 1 okishinya so-ddmku  629119744 Mar 30 16:08 SRX6828465.sum.gz
SRX6828465.sum.gz was set to analysis list.
Analyzing SRX6828465.sum.gz.
=-=-=MapSum	OK
-rw-r--r-- 1 okishinya so-ddmku       4444 Mar 30 16:15 SRX6828465.mapsum.html
Processing "SRX6828465.bisulalign.gz" (3856249189 bytes)
******: finished.
Start exporting ...
Finished.
=-=-=MPTC	OK
-rw-r--r-- 1 okishinya so-ddmku 22961918759 Mar 30 16:19 SRX6828465.graph
=-=-=CalcCoverage	OK
-rw-r--r-- 1 okishinya so-ddmku      557196 Mar 30 16:26 SRX6828465.stat.html
BinSeq                  :/lustre7/home/lustre4/okishinya/chipatlas/bin/Revisions/R_norvegicus/rm6/R_norvegicus_rm6.binseq
GraphFile               :SRX6828465.graph
Output File (methyl)    :SRX6828465.cpg.methyl.bedGraph.gz
Output File (cover)    :SRX6828465.cpg.cover.bedGraph.gz
Output File (tab)    :/dev/null
Output File (methpipe)    :SRX6828465.cpg.methpipe.tab.gz

=-=-=MethExport	OK
-rw-r--r-- 1 okishinya so-ddmku   224103839 Mar 30 16:40 SRX6828465.cpg.cover.bedGraph.gz
-rw-r--r-- 1 okishinya so-ddmku    99011655 Mar 30 16:40 SRX6828465.cpg.methpipe.tab.gz
-rw-r--r-- 1 okishinya so-ddmku   244406874 Mar 30 16:40 SRX6828465.cpg.methyl.bedGraph.gz
=-=-=bmap_sum	OK
=-=-=hypo- hyper-me-region	OK
-rw-r--r-- 1 okishinya so-ddmku   1066345 Mar 30 17:09 SRX6828465.hmr
-rw-r--r-- 1 okishinya so-ddmku     40485 Mar 30 17:09 SRX6828465.pmd
-rw-r--r-- 1 okishinya so-ddmku   7695291 Mar 30 17:09 SRX6828465.hypermr
=-=-=BigWig	OK
-rw-r--r-- 1 okishinya so-ddmku 163388925 Mar 30 17:13 SRX6828465.cpg.cover.bw
-rw-r--r-- 1 okishinya so-ddmku 138377941 Mar 30 17:11 SRX6828465.cpg.methyl.bw

=-=-=num_reads	31476958
=-=-=mapping_rate_1	0.814
=-=-=mapping_rate_2	0.801
=-=-=methyl_rate_cpg_total	0.716
=-=-=methyl_rate_cpg_lambda	-
=-=-=low_methyl_region	44511
=-=-=partial_methyl_region	1675
=-=-=high_methyl_region	322490
=-=-=coverage	0.920901
=-=-=end	210330_17:13:58
=-=-=duration	2.383