Job ID = 12237302
SRX = SRX6828464
Genome = rm6
Started at	210330_14:51:14

sra ファイルのダウンロード中...

Read layout: PAIRED


fastq に変換中...

Read 37265521 spots for SRR10096288/SRR10096288.sra
Written 37265521 spots for SRR10096288/SRR10096288.sra

fastq に変換しました。

-rw-r--r-- 1 okishinya so-ddmku 3062841280 Mar 30 14:57 SRR10096288_1.fastq.gz
-rw-r--r-- 1 okishinya so-ddmku 3234019355 Mar 30 14:57 SRR10096288_2.fastq.gz
Start BMap mapping with following parameters
 species                :R_norvegicus
 revision               :rm6
 seed offset            :0
 seed iterate           :20
 seed step              :5
 min seed hit           :2
 minimum seed length    :20
 maximum seed length    :26
 seed max hit count     :10
 minimum alignment score:150
 output summary file    :SRX6828464.sum.gz
 output alignment file  :SRX6828464.bisulalign

Loading index (FM-index)
    compression factor for suffix array is 2.
    compression factor for counter table is 32.
 -FM-index for c2t genome.... finished (elapsed: 35464 ms)
 -FM-Index for g2a genome.... finished (elapsed: 70596 ms)
 -suffix array for c2t genome.... finished (elapsed: 78632 ms)
 -suffix array for g2a genome.... finished (elapsed: 86573 ms)
 -reference sequence.... finished (elapsed: 86828 ms)
Index loading finished.
File(s) loaded: SRR10096288_1.fastq.gz, SRR10096288_2.fastq.gz.
Time elapsed:4475829 ms
mkdir: cannot create directory ‘/home/okishinya/tmpDirForFastq/SRX6828464’: File exists
=-=-=BMap	OK
-rw-r--r-- 1 okishinya so-ddmku 4290245585 Mar 30 16:19 SRX6828464.bisulalign.gz
-rw-r--r-- 1 okishinya so-ddmku  746604974 Mar 30 16:19 SRX6828464.sum.gz
SRX6828464.sum.gz was set to analysis list.
Analyzing SRX6828464.sum.gz.
=-=-=MapSum	OK
-rw-r--r-- 1 okishinya so-ddmku       4711 Mar 30 16:27 SRX6828464.mapsum.html
Processing "SRX6828464.bisulalign.gz" (4290245585 bytes)
************************************: finished.
Start exporting ...
Finished.
=-=-=MPTC	OK
-rw-r--r-- 1 okishinya so-ddmku 22961918759 Mar 30 16:32 SRX6828464.graph
=-=-=CalcCoverage	OK
-rw-r--r-- 1 okishinya so-ddmku      557295 Mar 30 16:40 SRX6828464.stat.html
BinSeq                  :/lustre7/home/lustre4/okishinya/chipatlas/bin/Revisions/R_norvegicus/rm6/R_norvegicus_rm6.binseq
GraphFile               :SRX6828464.graph
Output File (methyl)    :SRX6828464.cpg.methyl.bedGraph.gz
Output File (cover)    :SRX6828464.cpg.cover.bedGraph.gz
Output File (tab)    :/dev/null
Output File (methpipe)    :SRX6828464.cpg.methpipe.tab.gz

=-=-=MethExport	OK
-rw-r--r-- 1 okishinya so-ddmku   224340538 Mar 30 16:55 SRX6828464.cpg.cover.bedGraph.gz
-rw-r--r-- 1 okishinya so-ddmku   104683750 Mar 30 16:55 SRX6828464.cpg.methpipe.tab.gz
-rw-r--r-- 1 okishinya so-ddmku   246133898 Mar 30 16:55 SRX6828464.cpg.methyl.bedGraph.gz
=-=-=bmap_sum	OK
=-=-=hypo- hyper-me-region	OK
-rw-r--r-- 1 okishinya so-ddmku   1019972 Mar 30 17:40 SRX6828464.hmr
-rw-r--r-- 1 okishinya so-ddmku     38632 Mar 30 17:40 SRX6828464.pmd
-rw-r--r-- 1 okishinya so-ddmku   7816068 Mar 30 17:40 SRX6828464.hypermr
=-=-=BigWig	OK
-rw-r--r-- 1 okishinya so-ddmku 170389097 Mar 30 17:46 SRX6828464.cpg.cover.bw
-rw-r--r-- 1 okishinya so-ddmku 144879208 Mar 30 17:43 SRX6828464.cpg.methyl.bw

=-=-=num_reads	37265521
=-=-=mapping_rate_1	0.814
=-=-=mapping_rate_2	0.803
=-=-=methyl_rate_cpg_total	0.705
=-=-=methyl_rate_cpg_lambda	-
=-=-=low_methyl_region	42570
=-=-=partial_methyl_region	1593
=-=-=high_methyl_region	327438
=-=-=coverage	1.03547
=-=-=end	210330_17:46:52
=-=-=duration	2.927