Job ID = 12237272
SRX = SRX6828463
Genome = rm6
Started at	210330_14:50:59

sra ファイルのダウンロード中...

Read layout: PAIRED


fastq に変換中...

Read 28091952 spots for SRR10096287/SRR10096287.sra
Written 28091952 spots for SRR10096287/SRR10096287.sra

fastq に変換しました。

-rw-r--r-- 1 okishinya so-ddmku 2338685297 Mar 30 14:55 SRR10096287_1.fastq.gz
-rw-r--r-- 1 okishinya so-ddmku 2475381456 Mar 30 14:55 SRR10096287_2.fastq.gz
Start BMap mapping with following parameters
 species                :R_norvegicus
 revision               :rm6
 seed offset            :0
 seed iterate           :20
 seed step              :5
 min seed hit           :2
 minimum seed length    :20
 maximum seed length    :26
 seed max hit count     :10
 minimum alignment score:150
 output summary file    :SRX6828463.sum.gz
 output alignment file  :SRX6828463.bisulalign

Loading index (FM-index)
    compression factor for suffix array is 2.
    compression factor for counter table is 32.
 -FM-index for c2t genome.... finished (elapsed: 53175 ms)
 -FM-Index for g2a genome.... finished (elapsed: 108930 ms)
 -suffix array for c2t genome.... finished (elapsed: 127521 ms)
 -suffix array for g2a genome.... finished (elapsed: 149218 ms)
 -reference sequence.... finished (elapsed: 150526 ms)
Index loading finished.
File(s) loaded: SRR10096287_1.fastq.gz, SRR10096287_2.fastq.gz.
Time elapsed:2895832 ms
mkdir: cannot create directory ‘/home/okishinya/tmpDirForFastq/SRX6828463’: File exists
=-=-=BMap	OK
-rw-r--r-- 1 okishinya so-ddmku 3260864346 Mar 30 15:48 SRX6828463.bisulalign.gz
-rw-r--r-- 1 okishinya so-ddmku  557125437 Mar 30 15:48 SRX6828463.sum.gz
SRX6828463.sum.gz was set to analysis list.
Analyzing SRX6828463.sum.gz.
=-=-=MapSum	OK
-rw-r--r-- 1 okishinya so-ddmku       4529 Mar 30 15:54 SRX6828463.mapsum.html
Processing "SRX6828463.bisulalign.gz" (3260864346 bytes)
*********************************: finished.
Start exporting ...
Finished.
=-=-=MPTC	OK
-rw-r--r-- 1 okishinya so-ddmku 22961918759 Mar 30 15:57 SRX6828463.graph
=-=-=CalcCoverage	OK
-rw-r--r-- 1 okishinya so-ddmku      557025 Mar 30 16:04 SRX6828463.stat.html
BinSeq                  :/lustre7/home/lustre4/okishinya/chipatlas/bin/Revisions/R_norvegicus/rm6/R_norvegicus_rm6.binseq
GraphFile               :SRX6828463.graph
Output File (methyl)    :SRX6828463.cpg.methyl.bedGraph.gz
Output File (cover)    :SRX6828463.cpg.cover.bedGraph.gz
Output File (tab)    :/dev/null
Output File (methpipe)    :SRX6828463.cpg.methpipe.tab.gz

=-=-=MethExport	OK
-rw-r--r-- 1 okishinya so-ddmku   223859728 Mar 30 16:17 SRX6828463.cpg.cover.bedGraph.gz
-rw-r--r-- 1 okishinya so-ddmku    90189002 Mar 30 16:17 SRX6828463.cpg.methpipe.tab.gz
-rw-r--r-- 1 okishinya so-ddmku   242263346 Mar 30 16:17 SRX6828463.cpg.methyl.bedGraph.gz
=-=-=bmap_sum	OK
=-=-=hypo- hyper-me-region	OK
-rw-r--r-- 1 okishinya so-ddmku   1096790 Mar 30 16:45 SRX6828463.hmr
-rw-r--r-- 1 okishinya so-ddmku     39462 Mar 30 16:45 SRX6828463.pmd
-rw-r--r-- 1 okishinya so-ddmku   8134469 Mar 30 16:45 SRX6828463.hypermr
=-=-=BigWig	OK
-rw-r--r-- 1 okishinya so-ddmku 151792843 Mar 30 16:49 SRX6828463.cpg.cover.bw
-rw-r--r-- 1 okishinya so-ddmku 127059297 Mar 30 16:47 SRX6828463.cpg.methyl.bw

=-=-=num_reads	28091952
=-=-=mapping_rate_1	0.805
=-=-=mapping_rate_2	0.794
=-=-=methyl_rate_cpg_total	0.717
=-=-=methyl_rate_cpg_lambda	-
=-=-=low_methyl_region	45784
=-=-=partial_methyl_region	1633
=-=-=high_methyl_region	340915
=-=-=coverage	0.792585
=-=-=end	210330_16:49:51
=-=-=duration	1.981