Job ID = 12237245
SRX = SRX6828462
Genome = rm6
Started at	210330_14:50:29

sra ファイルのダウンロード中...

Read layout: PAIRED


fastq に変換中...

Read 20880538 spots for SRR10096286/SRR10096286.sra
Written 20880538 spots for SRR10096286/SRR10096286.sra

fastq に変換しました。

-rw-r--r-- 1 okishinya so-ddmku 1650592137 Mar 30 14:53 SRR10096286_1.fastq.gz
-rw-r--r-- 1 okishinya so-ddmku 1780154999 Mar 30 14:53 SRR10096286_2.fastq.gz
Start BMap mapping with following parameters
 species                :R_norvegicus
 revision               :rm6
 seed offset            :0
 seed iterate           :20
 seed step              :5
 min seed hit           :2
 minimum seed length    :20
 maximum seed length    :26
 seed max hit count     :10
 minimum alignment score:150
 output summary file    :SRX6828462.sum.gz
 output alignment file  :SRX6828462.bisulalign

Loading index (FM-index)
    compression factor for suffix array is 2.
    compression factor for counter table is 32.
 -FM-index for c2t genome.... finished (elapsed: 52725 ms)
 -FM-Index for g2a genome.... finished (elapsed: 108348 ms)
 -suffix array for c2t genome.... finished (elapsed: 151114 ms)
 -suffix array for g2a genome.... finished (elapsed: 199608 ms)
 -reference sequence.... finished (elapsed: 200965 ms)
Index loading finished.
File(s) loaded: SRR10096286_1.fastq.gz, SRR10096286_2.fastq.gz.
Time elapsed:2190478 ms
mkdir: cannot create directory ‘/home/okishinya/tmpDirForFastq/SRX6828462’: File exists
=-=-=BMap	OK
-rw-r--r-- 1 okishinya so-ddmku 3190485615 Mar 30 15:33 SRX6828462.bisulalign.gz
-rw-r--r-- 1 okishinya so-ddmku  424946991 Mar 30 15:33 SRX6828462.sum.gz
SRX6828462.sum.gz was set to analysis list.
Analyzing SRX6828462.sum.gz.
=-=-=MapSum	OK
-rw-r--r-- 1 okishinya so-ddmku       4705 Mar 30 15:39 SRX6828462.mapsum.html
Processing "SRX6828462.bisulalign.gz" (3190485615 bytes)
***********************************************: finished.
Start exporting ...
Finished.
=-=-=MPTC	OK
-rw-r--r-- 1 okishinya so-ddmku 22961918759 Mar 30 15:42 SRX6828462.graph
=-=-=CalcCoverage	OK
-rw-r--r-- 1 okishinya so-ddmku      561005 Mar 30 15:49 SRX6828462.stat.html
BinSeq                  :/lustre7/home/lustre4/okishinya/chipatlas/bin/Revisions/R_norvegicus/rm6/R_norvegicus_rm6.binseq
GraphFile               :SRX6828462.graph
Output File (methyl)    :SRX6828462.cpg.methyl.bedGraph.gz
Output File (cover)    :SRX6828462.cpg.cover.bedGraph.gz
Output File (tab)    :/dev/null
Output File (methpipe)    :SRX6828462.cpg.methpipe.tab.gz

=-=-=MethExport	OK
-rw-r--r-- 1 okishinya so-ddmku   223140592 Mar 30 16:02 SRX6828462.cpg.cover.bedGraph.gz
-rw-r--r-- 1 okishinya so-ddmku    73328642 Mar 30 16:02 SRX6828462.cpg.methpipe.tab.gz
-rw-r--r-- 1 okishinya so-ddmku   238947911 Mar 30 16:02 SRX6828462.cpg.methyl.bedGraph.gz
=-=-=bmap_sum	OK
=-=-=hypo- hyper-me-region	OK
-rw-r--r-- 1 okishinya so-ddmku    775985 Mar 30 16:33 SRX6828462.hmr
-rw-r--r-- 1 okishinya so-ddmku     21761 Mar 30 16:33 SRX6828462.pmd
-rw-r--r-- 1 okishinya so-ddmku   9310374 Mar 30 16:33 SRX6828462.hypermr
=-=-=BigWig	OK
-rw-r--r-- 1 okishinya so-ddmku 128937039 Mar 30 16:36 SRX6828462.cpg.cover.bw
-rw-r--r-- 1 okishinya so-ddmku  82377112 Mar 30 16:34 SRX6828462.cpg.methyl.bw

=-=-=num_reads	20880537
=-=-=mapping_rate_1	0.889
=-=-=mapping_rate_2	0.875
=-=-=methyl_rate_cpg_total	0.693
=-=-=methyl_rate_cpg_lambda	-
=-=-=low_methyl_region	32401
=-=-=partial_methyl_region	902
=-=-=high_methyl_region	389985
=-=-=coverage	0.842693
=-=-=end	210330_16:36:53
=-=-=duration	1.773