Job ID = 12237279
SRX = SRX6828461
Genome = rm6
Started at	210330_14:50:59

sra ファイルのダウンロード中...

Read layout: PAIRED


fastq に変換中...

Read 30648230 spots for SRR10096285/SRR10096285.sra
Written 30648230 spots for SRR10096285/SRR10096285.sra

fastq に変換しました。

-rw-r--r-- 1 okishinya so-ddmku 2464603577 Mar 30 14:55 SRR10096285_1.fastq.gz
-rw-r--r-- 1 okishinya so-ddmku 2705216925 Mar 30 14:55 SRR10096285_2.fastq.gz
Start BMap mapping with following parameters
 species                :R_norvegicus
 revision               :rm6
 seed offset            :0
 seed iterate           :20
 seed step              :5
 min seed hit           :2
 minimum seed length    :20
 maximum seed length    :26
 seed max hit count     :10
 minimum alignment score:150
 output summary file    :SRX6828461.sum.gz
 output alignment file  :SRX6828461.bisulalign

Loading index (FM-index)
    compression factor for suffix array is 2.
    compression factor for counter table is 32.
 -FM-index for c2t genome.... finished (elapsed: 51877 ms)
 -FM-Index for g2a genome.... finished (elapsed: 106603 ms)
 -suffix array for c2t genome.... finished (elapsed: 117070 ms)
 -suffix array for g2a genome.... finished (elapsed: 127261 ms)
 -reference sequence.... finished (elapsed: 127676 ms)
Index loading finished.
File(s) loaded: SRR10096285_1.fastq.gz, SRR10096285_2.fastq.gz.
Time elapsed:3250072 ms
mkdir: cannot create directory ‘/home/okishinya/tmpDirForFastq/SRX6828461’: File exists
=-=-=BMap	OK
-rw-r--r-- 1 okishinya so-ddmku 5169941226 Mar 30 15:55 SRX6828461.bisulalign.gz
-rw-r--r-- 1 okishinya so-ddmku  631427933 Mar 30 15:55 SRX6828461.sum.gz
SRX6828461.sum.gz was set to analysis list.
Analyzing SRX6828461.sum.gz.
=-=-=MapSum	OK
-rw-r--r-- 1 okishinya so-ddmku       4549 Mar 30 16:04 SRX6828461.mapsum.html
Processing "SRX6828461.bisulalign.gz" (5169941226 bytes)
*****************************************: finished.
Start exporting ...
Finished.
=-=-=MPTC	OK
-rw-r--r-- 1 okishinya so-ddmku 22961918759 Mar 30 16:08 SRX6828461.graph
=-=-=CalcCoverage	OK
-rw-r--r-- 1 okishinya so-ddmku      557360 Mar 30 16:14 SRX6828461.stat.html
BinSeq                  :/lustre7/home/lustre4/okishinya/chipatlas/bin/Revisions/R_norvegicus/rm6/R_norvegicus_rm6.binseq
GraphFile               :SRX6828461.graph
Output File (methyl)    :SRX6828461.cpg.methyl.bedGraph.gz
Output File (cover)    :SRX6828461.cpg.cover.bedGraph.gz
Output File (tab)    :/dev/null
Output File (methpipe)    :SRX6828461.cpg.methpipe.tab.gz

=-=-=MethExport	OK
-rw-r--r-- 1 okishinya so-ddmku   224123178 Mar 30 16:28 SRX6828461.cpg.cover.bedGraph.gz
-rw-r--r-- 1 okishinya so-ddmku    97272770 Mar 30 16:28 SRX6828461.cpg.methpipe.tab.gz
-rw-r--r-- 1 okishinya so-ddmku   244463769 Mar 30 16:28 SRX6828461.cpg.methyl.bedGraph.gz
=-=-=bmap_sum	OK
=-=-=hypo- hyper-me-region	OK
-rw-r--r-- 1 okishinya so-ddmku    895872 Mar 30 17:05 SRX6828461.hmr
-rw-r--r-- 1 okishinya so-ddmku     26926 Mar 30 17:05 SRX6828461.pmd
-rw-r--r-- 1 okishinya so-ddmku   8679194 Mar 30 17:05 SRX6828461.hypermr
=-=-=BigWig	OK
-rw-r--r-- 1 okishinya so-ddmku 161206399 Mar 30 17:10 SRX6828461.cpg.cover.bw
-rw-r--r-- 1 okishinya so-ddmku 134893868 Mar 30 17:08 SRX6828461.cpg.methyl.bw

=-=-=num_reads	30648228
=-=-=mapping_rate_1	0.89
=-=-=mapping_rate_2	0.871
=-=-=methyl_rate_cpg_total	0.713
=-=-=methyl_rate_cpg_lambda	-
=-=-=low_methyl_region	37403
=-=-=partial_methyl_region	1096
=-=-=high_methyl_region	363672
=-=-=coverage	1.2485
=-=-=end	210330_17:10:46
=-=-=duration	2.329