Job ID = 12237281
SRX = SRX6828460
Genome = rm6
Started at	210330_14:50:59

sra ファイルのダウンロード中...

Read layout: PAIRED


fastq に変換中...

Read 31385304 spots for SRR10096284/SRR10096284.sra
Written 31385304 spots for SRR10096284/SRR10096284.sra

fastq に変換しました。

-rw-r--r-- 1 okishinya so-ddmku 2516285426 Mar 30 14:55 SRR10096284_1.fastq.gz
-rw-r--r-- 1 okishinya so-ddmku 2714283909 Mar 30 14:55 SRR10096284_2.fastq.gz
Start BMap mapping with following parameters
 species                :R_norvegicus
 revision               :rm6
 seed offset            :0
 seed iterate           :20
 seed step              :5
 min seed hit           :2
 minimum seed length    :20
 maximum seed length    :26
 seed max hit count     :10
 minimum alignment score:150
 output summary file    :SRX6828460.sum.gz
 output alignment file  :SRX6828460.bisulalign

Loading index (FM-index)
    compression factor for suffix array is 2.
    compression factor for counter table is 32.
 -FM-index for c2t genome.... finished (elapsed: 52764 ms)
 -FM-Index for g2a genome.... finished (elapsed: 108557 ms)
 -suffix array for c2t genome.... finished (elapsed: 126275 ms)
 -suffix array for g2a genome.... finished (elapsed: 143660 ms)
 -reference sequence.... finished (elapsed: 144940 ms)
Index loading finished.
File(s) loaded: SRR10096284_1.fastq.gz, SRR10096284_2.fastq.gz.
Time elapsed:3535176 ms
mkdir: cannot create directory ‘/home/okishinya/tmpDirForFastq/SRX6828460’: File exists
=-=-=BMap	OK
-rw-r--r-- 1 okishinya so-ddmku 5063661946 Mar 30 16:00 SRX6828460.bisulalign.gz
-rw-r--r-- 1 okishinya so-ddmku  646301684 Mar 30 16:00 SRX6828460.sum.gz
SRX6828460.sum.gz was set to analysis list.
Analyzing SRX6828460.sum.gz.
=-=-=MapSum	OK
-rw-r--r-- 1 okishinya so-ddmku       4627 Mar 30 16:08 SRX6828460.mapsum.html
Processing "SRX6828460.bisulalign.gz" (5063661946 bytes)
*************************: finished.
Start exporting ...
Finished.
=-=-=MPTC	OK
-rw-r--r-- 1 okishinya so-ddmku 22961918759 Mar 30 16:13 SRX6828460.graph
=-=-=CalcCoverage	OK
-rw-r--r-- 1 okishinya so-ddmku      557428 Mar 30 16:19 SRX6828460.stat.html
BinSeq                  :/lustre7/home/lustre4/okishinya/chipatlas/bin/Revisions/R_norvegicus/rm6/R_norvegicus_rm6.binseq
GraphFile               :SRX6828460.graph
Output File (methyl)    :SRX6828460.cpg.methyl.bedGraph.gz
Output File (cover)    :SRX6828460.cpg.cover.bedGraph.gz
Output File (tab)    :/dev/null
Output File (methpipe)    :SRX6828460.cpg.methpipe.tab.gz

=-=-=MethExport	OK
-rw-r--r-- 1 okishinya so-ddmku   224113654 Mar 30 16:33 SRX6828460.cpg.cover.bedGraph.gz
-rw-r--r-- 1 okishinya so-ddmku    99309337 Mar 30 16:33 SRX6828460.cpg.methpipe.tab.gz
-rw-r--r-- 1 okishinya so-ddmku   244736578 Mar 30 16:33 SRX6828460.cpg.methyl.bedGraph.gz
=-=-=bmap_sum	OK
=-=-=hypo- hyper-me-region	OK
-rw-r--r-- 1 okishinya so-ddmku    910314 Mar 30 17:11 SRX6828460.hmr
-rw-r--r-- 1 okishinya so-ddmku     27355 Mar 30 17:11 SRX6828460.pmd
-rw-r--r-- 1 okishinya so-ddmku   8521855 Mar 30 17:11 SRX6828460.hypermr
=-=-=BigWig	OK
-rw-r--r-- 1 okishinya so-ddmku 163593002 Mar 30 17:15 SRX6828460.cpg.cover.bw
-rw-r--r-- 1 okishinya so-ddmku 137714199 Mar 30 17:13 SRX6828460.cpg.methyl.bw

=-=-=num_reads	31385301
=-=-=mapping_rate_1	0.887
=-=-=mapping_rate_2	0.872
=-=-=methyl_rate_cpg_total	0.715
=-=-=methyl_rate_cpg_lambda	0
=-=-=low_methyl_region	37998
=-=-=partial_methyl_region	1112
=-=-=high_methyl_region	357134
=-=-=coverage	1.25214
=-=-=end	210330_17:16:00
=-=-=duration	2.416