Job ID = 12237307
SRX = SRX6828459
Genome = rm6
Started at	210330_14:51:14

sra ファイルのダウンロード中...

Read layout: PAIRED


fastq に変換中...

Read 41749593 spots for SRR10096283/SRR10096283.sra
Written 41749593 spots for SRR10096283/SRR10096283.sra

fastq に変換しました。

-rw-r--r-- 1 okishinya so-ddmku 3344747925 Mar 30 14:58 SRR10096283_1.fastq.gz
-rw-r--r-- 1 okishinya so-ddmku 3577652813 Mar 30 14:58 SRR10096283_2.fastq.gz
Start BMap mapping with following parameters
 species                :R_norvegicus
 revision               :rm6
 seed offset            :0
 seed iterate           :20
 seed step              :5
 min seed hit           :2
 minimum seed length    :20
 maximum seed length    :26
 seed max hit count     :10
 minimum alignment score:150
 output summary file    :SRX6828459.sum.gz
 output alignment file  :SRX6828459.bisulalign

Loading index (FM-index)
    compression factor for suffix array is 2.
    compression factor for counter table is 32.
 -FM-index for c2t genome.... finished (elapsed: 35454 ms)
 -FM-Index for g2a genome.... finished (elapsed: 71431 ms)
 -suffix array for c2t genome.... finished (elapsed: 83058 ms)
 -suffix array for g2a genome.... finished (elapsed: 99873 ms)
 -reference sequence.... finished (elapsed: 101081 ms)
Index loading finished.
File(s) loaded: SRR10096283_1.fastq.gz, SRR10096283_2.fastq.gz.
Time elapsed:5791291 ms
mkdir: cannot create directory ‘/home/okishinya/tmpDirForFastq/SRX6828459’: File exists
=-=-=BMap	OK
-rw-r--r-- 1 okishinya so-ddmku 6489905158 Mar 30 16:43 SRX6828459.bisulalign.gz
-rw-r--r-- 1 okishinya so-ddmku  864932090 Mar 30 16:43 SRX6828459.sum.gz
SRX6828459.sum.gz was set to analysis list.
Analyzing SRX6828459.sum.gz.
=-=-=MapSum	OK
-rw-r--r-- 1 okishinya so-ddmku       4898 Mar 30 16:55 SRX6828459.mapsum.html
Processing "SRX6828459.bisulalign.gz" (6489905158 bytes)
*****************: finished.
Start exporting ...
Finished.
=-=-=MPTC	OK
-rw-r--r-- 1 okishinya so-ddmku 22961918759 Mar 30 17:01 SRX6828459.graph
=-=-=CalcCoverage	OK
-rw-r--r-- 1 okishinya so-ddmku      559504 Mar 30 17:09 SRX6828459.stat.html
BinSeq                  :/lustre7/home/lustre4/okishinya/chipatlas/bin/Revisions/R_norvegicus/rm6/R_norvegicus_rm6.binseq
GraphFile               :SRX6828459.graph
Output File (methyl)    :SRX6828459.cpg.methyl.bedGraph.gz
Output File (cover)    :SRX6828459.cpg.cover.bedGraph.gz
Output File (tab)    :/dev/null
Output File (methpipe)    :SRX6828459.cpg.methpipe.tab.gz

=-=-=MethExport	OK
-rw-r--r-- 1 okishinya so-ddmku   224706368 Mar 30 17:25 SRX6828459.cpg.cover.bedGraph.gz
-rw-r--r-- 1 okishinya so-ddmku   115464269 Mar 30 17:25 SRX6828459.cpg.methpipe.tab.gz
-rw-r--r-- 1 okishinya so-ddmku   249209714 Mar 30 17:25 SRX6828459.cpg.methyl.bedGraph.gz
=-=-=bmap_sum	OK
=-=-=hypo- hyper-me-region	OK
-rw-r--r-- 1 okishinya so-ddmku    974430 Mar 30 18:24 SRX6828459.hmr
-rw-r--r-- 1 okishinya so-ddmku     33438 Mar 30 18:24 SRX6828459.pmd
-rw-r--r-- 1 okishinya so-ddmku   8989170 Mar 30 18:24 SRX6828459.hypermr
=-=-=BigWig	OK
-rw-r--r-- 1 okishinya so-ddmku 182608552 Mar 30 18:30 SRX6828459.cpg.cover.bw
-rw-r--r-- 1 okishinya so-ddmku 157518440 Mar 30 18:27 SRX6828459.cpg.methyl.bw

=-=-=num_reads	41749591
=-=-=mapping_rate_1	0.891
=-=-=mapping_rate_2	0.879
=-=-=methyl_rate_cpg_total	0.702
=-=-=methyl_rate_cpg_lambda	-
=-=-=low_methyl_region	40668
=-=-=partial_methyl_region	1336
=-=-=high_methyl_region	376392
=-=-=coverage	1.6609
=-=-=end	210330_18:31:10
=-=-=duration	3.665