Job ID = 12237298
SRX = SRX6828458
Genome = rm6
Started at	210330_14:51:14

sra ファイルのダウンロード中...

Read layout: PAIRED


fastq に変換中...

Read 33125650 spots for SRR10096282/SRR10096282.sra
Written 33125650 spots for SRR10096282/SRR10096282.sra

fastq に変換しました。

-rw-r--r-- 1 okishinya so-ddmku 2576646207 Mar 30 14:55 SRR10096282_1.fastq.gz
-rw-r--r-- 1 okishinya so-ddmku 2716196388 Mar 30 14:55 SRR10096282_2.fastq.gz
Start BMap mapping with following parameters
 species                :R_norvegicus
 revision               :rm6
 seed offset            :0
 seed iterate           :20
 seed step              :5
 min seed hit           :2
 minimum seed length    :20
 maximum seed length    :26
 seed max hit count     :10
 minimum alignment score:150
 output summary file    :SRX6828458.sum.gz
 output alignment file  :SRX6828458.bisulalign

Loading index (FM-index)
    compression factor for suffix array is 2.
    compression factor for counter table is 32.
 -FM-index for c2t genome.... finished (elapsed: 52733 ms)
 -FM-Index for g2a genome.... finished (elapsed: 108421 ms)
 -suffix array for c2t genome.... finished (elapsed: 126667 ms)
 -suffix array for g2a genome.... finished (elapsed: 143847 ms)
 -reference sequence.... finished (elapsed: 145051 ms)
Index loading finished.
File(s) loaded: SRR10096282_1.fastq.gz, SRR10096282_2.fastq.gz.
Time elapsed:3822898 ms
mkdir: cannot create directory ‘/home/okishinya/tmpDirForFastq/SRX6828458’: File exists
=-=-=BMap	OK
-rw-r--r-- 1 okishinya so-ddmku 4350668493 Mar 30 16:05 SRX6828458.bisulalign.gz
-rw-r--r-- 1 okishinya so-ddmku  685906599 Mar 30 16:05 SRX6828458.sum.gz
SRX6828458.sum.gz was set to analysis list.
Analyzing SRX6828458.sum.gz.
=-=-=MapSum	OK
-rw-r--r-- 1 okishinya so-ddmku       4559 Mar 30 16:12 SRX6828458.mapsum.html
Processing "SRX6828458.bisulalign.gz" (4350668493 bytes)
*********************************: finished.
Start exporting ...
Finished.
=-=-=MPTC	OK
-rw-r--r-- 1 okishinya so-ddmku 22961918759 Mar 30 16:17 SRX6828458.graph
=-=-=CalcCoverage	OK
-rw-r--r-- 1 okishinya so-ddmku      557295 Mar 30 16:23 SRX6828458.stat.html
BinSeq                  :/lustre7/home/lustre4/okishinya/chipatlas/bin/Revisions/R_norvegicus/rm6/R_norvegicus_rm6.binseq
GraphFile               :SRX6828458.graph
Output File (methyl)    :SRX6828458.cpg.methyl.bedGraph.gz
Output File (cover)    :SRX6828458.cpg.cover.bedGraph.gz
Output File (tab)    :/dev/null
Output File (methpipe)    :SRX6828458.cpg.methpipe.tab.gz

=-=-=MethExport	OK
-rw-r--r-- 1 okishinya so-ddmku   224008747 Mar 30 16:37 SRX6828458.cpg.cover.bedGraph.gz
-rw-r--r-- 1 okishinya so-ddmku    97415829 Mar 30 16:37 SRX6828458.cpg.methpipe.tab.gz
-rw-r--r-- 1 okishinya so-ddmku   245277541 Mar 30 16:37 SRX6828458.cpg.methyl.bedGraph.gz
=-=-=bmap_sum	OK
=-=-=hypo- hyper-me-region	OK
-rw-r--r-- 1 okishinya so-ddmku    864769 Mar 30 17:14 SRX6828458.hmr
-rw-r--r-- 1 okishinya so-ddmku     29207 Mar 30 17:14 SRX6828458.pmd
-rw-r--r-- 1 okishinya so-ddmku   8385656 Mar 30 17:14 SRX6828458.hypermr
=-=-=BigWig	OK
-rw-r--r-- 1 okishinya so-ddmku 160047619 Mar 30 17:18 SRX6828458.cpg.cover.bw
-rw-r--r-- 1 okishinya so-ddmku 135451778 Mar 30 17:16 SRX6828458.cpg.methyl.bw

=-=-=num_reads	33125650
=-=-=mapping_rate_1	0.885
=-=-=mapping_rate_2	0.878
=-=-=methyl_rate_cpg_total	0.676
=-=-=methyl_rate_cpg_lambda	-
=-=-=low_methyl_region	36099
=-=-=partial_methyl_region	1199
=-=-=high_methyl_region	351333
=-=-=coverage	1.13172
=-=-=end	210330_17:18:49
=-=-=duration	2.459