Job ID = 12237311
SRX = SRX6828457
Genome = rm6
Started at	210330_14:51:29

sra ファイルのダウンロード中...

Read layout: PAIRED


fastq に変換中...

Read 45834208 spots for SRR10096281/SRR10096281.sra
Written 45834208 spots for SRR10096281/SRR10096281.sra

fastq に変換しました。

-rw-r--r-- 1 okishinya so-ddmku 3673763951 Mar 30 14:59 SRR10096281_1.fastq.gz
-rw-r--r-- 1 okishinya so-ddmku 3925456887 Mar 30 14:59 SRR10096281_2.fastq.gz
Start BMap mapping with following parameters
 species                :R_norvegicus
 revision               :rm6
 seed offset            :0
 seed iterate           :20
 seed step              :5
 min seed hit           :2
 minimum seed length    :20
 maximum seed length    :26
 seed max hit count     :10
 minimum alignment score:150
 output summary file    :SRX6828457.sum.gz
 output alignment file  :SRX6828457.bisulalign

Loading index (FM-index)
    compression factor for suffix array is 2.
    compression factor for counter table is 32.
 -FM-index for c2t genome.... finished (elapsed: 34841 ms)
 -FM-Index for g2a genome.... finished (elapsed: 70834 ms)
 -suffix array for c2t genome.... finished (elapsed: 80517 ms)
 -suffix array for g2a genome.... finished (elapsed: 89891 ms)
 -reference sequence.... finished (elapsed: 90191 ms)
Index loading finished.
File(s) loaded: SRR10096281_1.fastq.gz, SRR10096281_2.fastq.gz.
Time elapsed:8814410 ms
mkdir: cannot create directory ‘/home/okishinya/tmpDirForFastq/SRX6828457’: File exists
=-=-=BMap	OK
-rw-r--r-- 1 okishinya so-ddmku 7252315250 Mar 30 17:35 SRX6828457.bisulalign.gz
-rw-r--r-- 1 okishinya so-ddmku  951455089 Mar 30 17:35 SRX6828457.sum.gz
SRX6828457.sum.gz was set to analysis list.
Analyzing SRX6828457.sum.gz.
=-=-=MapSum	OK
-rw-r--r-- 1 okishinya so-ddmku       4886 Mar 30 17:48 SRX6828457.mapsum.html
Processing "SRX6828457.bisulalign.gz" (7252315250 bytes)
***************************: finished.
Start exporting ...
Finished.
=-=-=MPTC	OK
-rw-r--r-- 1 okishinya so-ddmku 22961918759 Mar 30 17:55 SRX6828457.graph
=-=-=CalcCoverage	OK
-rw-r--r-- 1 okishinya so-ddmku      559533 Mar 30 18:03 SRX6828457.stat.html
BinSeq                  :/lustre7/home/lustre4/okishinya/chipatlas/bin/Revisions/R_norvegicus/rm6/R_norvegicus_rm6.binseq
GraphFile               :SRX6828457.graph
Output File (methyl)    :SRX6828457.cpg.methyl.bedGraph.gz
Output File (cover)    :SRX6828457.cpg.cover.bedGraph.gz
Output File (tab)    :/dev/null
Output File (methpipe)    :SRX6828457.cpg.methpipe.tab.gz

=-=-=MethExport	OK
-rw-r--r-- 1 okishinya so-ddmku   225043770 Mar 30 18:19 SRX6828457.cpg.cover.bedGraph.gz
-rw-r--r-- 1 okishinya so-ddmku   107919203 Mar 30 18:19 SRX6828457.cpg.methpipe.tab.gz
-rw-r--r-- 1 okishinya so-ddmku   249790655 Mar 30 18:19 SRX6828457.cpg.methyl.bedGraph.gz
=-=-=bmap_sum	OK
=-=-=hypo- hyper-me-region	OK
-rw-r--r-- 1 okishinya so-ddmku   1041796 Mar 30 19:13 SRX6828457.hmr
-rw-r--r-- 1 okishinya so-ddmku     29041 Mar 30 19:13 SRX6828457.pmd
-rw-r--r-- 1 okishinya so-ddmku  10441159 Mar 30 19:13 SRX6828457.hypermr
=-=-=BigWig	OK
-rw-r--r-- 1 okishinya so-ddmku 171318883 Mar 30 19:19 SRX6828457.cpg.cover.bw
-rw-r--r-- 1 okishinya so-ddmku 147039758 Mar 30 19:16 SRX6828457.cpg.methyl.bw

=-=-=num_reads	45834208
=-=-=mapping_rate_1	0.895
=-=-=mapping_rate_2	0.884
=-=-=methyl_rate_cpg_total	0.679
=-=-=methyl_rate_cpg_lambda	-
=-=-=low_methyl_region	43472
=-=-=partial_methyl_region	1197
=-=-=high_methyl_region	437192
=-=-=coverage	1.99041
=-=-=end	210330_19:19:25
=-=-=duration	4.465