Job ID = 12237277
SRX = SRX6828456
Genome = rm6
Started at	210330_14:50:59

sra ファイルのダウンロード中...

Read layout: PAIRED


fastq に変換中...

Read 29564888 spots for SRR10096280/SRR10096280.sra
Written 29564888 spots for SRR10096280/SRR10096280.sra

fastq に変換しました。

-rw-r--r-- 1 okishinya so-ddmku 2305469974 Mar 30 14:55 SRR10096280_1.fastq.gz
-rw-r--r-- 1 okishinya so-ddmku 2457067250 Mar 30 14:55 SRR10096280_2.fastq.gz
Start BMap mapping with following parameters
 species                :R_norvegicus
 revision               :rm6
 seed offset            :0
 seed iterate           :20
 seed step              :5
 min seed hit           :2
 minimum seed length    :20
 maximum seed length    :26
 seed max hit count     :10
 minimum alignment score:150
 output summary file    :SRX6828456.sum.gz
 output alignment file  :SRX6828456.bisulalign

Loading index (FM-index)
    compression factor for suffix array is 2.
    compression factor for counter table is 32.
 -FM-index for c2t genome.... finished (elapsed: 52092 ms)
 -FM-Index for g2a genome.... finished (elapsed: 106778 ms)
 -suffix array for c2t genome.... finished (elapsed: 116963 ms)
 -suffix array for g2a genome.... finished (elapsed: 126964 ms)
 -reference sequence.... finished (elapsed: 127365 ms)
Index loading finished.
File(s) loaded: SRR10096280_1.fastq.gz, SRR10096280_2.fastq.gz.
Time elapsed:3140507 ms
mkdir: cannot create directory ‘/home/okishinya/tmpDirForFastq/SRX6828456’: File exists
=-=-=BMap	OK
-rw-r--r-- 1 okishinya so-ddmku 3928025964 Mar 30 15:52 SRX6828456.bisulalign.gz
-rw-r--r-- 1 okishinya so-ddmku  614560233 Mar 30 15:52 SRX6828456.sum.gz
SRX6828456.sum.gz was set to analysis list.
Analyzing SRX6828456.sum.gz.
=-=-=MapSum	OK
-rw-r--r-- 1 okishinya so-ddmku       4938 Mar 30 15:59 SRX6828456.mapsum.html
Processing "SRX6828456.bisulalign.gz" (3928025964 bytes)
*****************************************: finished.
Start exporting ...
Finished.
=-=-=MPTC	OK
-rw-r--r-- 1 okishinya so-ddmku 22961918759 Mar 30 16:03 SRX6828456.graph
=-=-=CalcCoverage	OK
-rw-r--r-- 1 okishinya so-ddmku      557145 Mar 30 16:10 SRX6828456.stat.html
BinSeq                  :/lustre7/home/lustre4/okishinya/chipatlas/bin/Revisions/R_norvegicus/rm6/R_norvegicus_rm6.binseq
GraphFile               :SRX6828456.graph
Output File (methyl)    :SRX6828456.cpg.methyl.bedGraph.gz
Output File (cover)    :SRX6828456.cpg.cover.bedGraph.gz
Output File (tab)    :/dev/null
Output File (methpipe)    :SRX6828456.cpg.methpipe.tab.gz

=-=-=MethExport	OK
-rw-r--r-- 1 okishinya so-ddmku   223864969 Mar 30 16:23 SRX6828456.cpg.cover.bedGraph.gz
-rw-r--r-- 1 okishinya so-ddmku    96477888 Mar 30 16:23 SRX6828456.cpg.methpipe.tab.gz
-rw-r--r-- 1 okishinya so-ddmku   244432286 Mar 30 16:23 SRX6828456.cpg.methyl.bedGraph.gz
=-=-=bmap_sum	OK
=-=-=hypo- hyper-me-region	OK
-rw-r--r-- 1 okishinya so-ddmku    921221 Mar 30 17:00 SRX6828456.hmr
-rw-r--r-- 1 okishinya so-ddmku     33104 Mar 30 17:00 SRX6828456.pmd
-rw-r--r-- 1 okishinya so-ddmku   8320750 Mar 30 17:00 SRX6828456.hypermr
=-=-=BigWig	OK
-rw-r--r-- 1 okishinya so-ddmku 158435912 Mar 30 17:05 SRX6828456.cpg.cover.bw
-rw-r--r-- 1 okishinya so-ddmku 133459721 Mar 30 17:02 SRX6828456.cpg.methyl.bw

=-=-=num_reads	29564887
=-=-=mapping_rate_1	0.887
=-=-=mapping_rate_2	0.879
=-=-=methyl_rate_cpg_total	0.678
=-=-=methyl_rate_cpg_lambda	0
=-=-=low_methyl_region	38450
=-=-=partial_methyl_region	1371
=-=-=high_methyl_region	348636
=-=-=coverage	1.02126
=-=-=end	210330_17:05:26
=-=-=duration	2.240