Job ID = 12237299
SRX = SRX6828455
Genome = rm6
Started at	210330_14:51:21

sra ファイルのダウンロード中...

Read layout: PAIRED


fastq に変換中...

Read 33663173 spots for SRR10096279/SRR10096279.sra
Written 33663173 spots for SRR10096279/SRR10096279.sra

fastq に変換しました。

-rw-r--r-- 1 okishinya so-ddmku 2636382104 Mar 30 14:56 SRR10096279_1.fastq.gz
-rw-r--r-- 1 okishinya so-ddmku 2778236963 Mar 30 14:56 SRR10096279_2.fastq.gz
Start BMap mapping with following parameters
 species                :R_norvegicus
 revision               :rm6
 seed offset            :0
 seed iterate           :20
 seed step              :5
 min seed hit           :2
 minimum seed length    :20
 maximum seed length    :26
 seed max hit count     :10
 minimum alignment score:150
 output summary file    :SRX6828455.sum.gz
 output alignment file  :SRX6828455.bisulalign

Loading index (FM-index)
    compression factor for suffix array is 2.
    compression factor for counter table is 32.
 -FM-index for c2t genome.... finished (elapsed: 36056 ms)
 -FM-Index for g2a genome.... finished (elapsed: 71567 ms)
 -suffix array for c2t genome.... finished (elapsed: 80781 ms)
 -suffix array for g2a genome.... finished (elapsed: 90184 ms)
 -reference sequence.... finished (elapsed: 90599 ms)
Index loading finished.
File(s) loaded: SRR10096279_1.fastq.gz, SRR10096279_2.fastq.gz.
Time elapsed:4671516 ms
mkdir: cannot create directory ‘/home/okishinya/tmpDirForFastq/SRX6828455’: File exists
=-=-=BMap	OK
-rw-r--r-- 1 okishinya so-ddmku 4590351239 Mar 30 16:21 SRX6828455.bisulalign.gz
-rw-r--r-- 1 okishinya so-ddmku  698360606 Mar 30 16:21 SRX6828455.sum.gz
SRX6828455.sum.gz was set to analysis list.
Analyzing SRX6828455.sum.gz.
=-=-=MapSum	OK
-rw-r--r-- 1 okishinya so-ddmku       5213 Mar 30 16:29 SRX6828455.mapsum.html
Processing "SRX6828455.bisulalign.gz" (4590351239 bytes)
*****************: finished.
Start exporting ...
Finished.
=-=-=MPTC	OK
-rw-r--r-- 1 okishinya so-ddmku 22961918759 Mar 30 16:35 SRX6828455.graph
=-=-=CalcCoverage	OK
-rw-r--r-- 1 okishinya so-ddmku      557319 Mar 30 16:43 SRX6828455.stat.html
BinSeq                  :/lustre7/home/lustre4/okishinya/chipatlas/bin/Revisions/R_norvegicus/rm6/R_norvegicus_rm6.binseq
GraphFile               :SRX6828455.graph
Output File (methyl)    :SRX6828455.cpg.methyl.bedGraph.gz
Output File (cover)    :SRX6828455.cpg.cover.bedGraph.gz
Output File (tab)    :/dev/null
Output File (methpipe)    :SRX6828455.cpg.methpipe.tab.gz

=-=-=MethExport	OK
-rw-r--r-- 1 okishinya so-ddmku   224129024 Mar 30 16:58 SRX6828455.cpg.cover.bedGraph.gz
-rw-r--r-- 1 okishinya so-ddmku   100590813 Mar 30 16:58 SRX6828455.cpg.methpipe.tab.gz
-rw-r--r-- 1 okishinya so-ddmku   246015693 Mar 30 16:58 SRX6828455.cpg.methyl.bedGraph.gz
=-=-=bmap_sum	OK
=-=-=hypo- hyper-me-region	OK
-rw-r--r-- 1 okishinya so-ddmku    869822 Mar 30 17:41 SRX6828455.hmr
-rw-r--r-- 1 okishinya so-ddmku     32908 Mar 30 17:41 SRX6828455.pmd
-rw-r--r-- 1 okishinya so-ddmku   8196483 Mar 30 17:41 SRX6828455.hypermr
=-=-=BigWig	OK
-rw-r--r-- 1 okishinya so-ddmku 164581662 Mar 30 17:47 SRX6828455.cpg.cover.bw
-rw-r--r-- 1 okishinya so-ddmku 139962027 Mar 30 17:44 SRX6828455.cpg.methyl.bw

=-=-=num_reads	33663172
=-=-=mapping_rate_1	0.888
=-=-=mapping_rate_2	0.88
=-=-=methyl_rate_cpg_total	0.687
=-=-=methyl_rate_cpg_lambda	-
=-=-=low_methyl_region	36304
=-=-=partial_methyl_region	1357
=-=-=high_methyl_region	343426
=-=-=coverage	1.17215
=-=-=end	210330_17:47:25
=-=-=duration	2.934