Job ID = 12237291
SRX = SRX6828454
Genome = rm6
Started at	210330_14:51:14

sra ファイルのダウンロード中...

Read layout: PAIRED


fastq に変換中...

Read 32732445 spots for SRR10096278/SRR10096278.sra
Written 32732445 spots for SRR10096278/SRR10096278.sra

fastq に変換しました。

-rw-r--r-- 1 okishinya so-ddmku 2688368529 Mar 30 14:55 SRR10096278_1.fastq.gz
-rw-r--r-- 1 okishinya so-ddmku 3003325663 Mar 30 14:55 SRR10096278_2.fastq.gz
Start BMap mapping with following parameters
 species                :R_norvegicus
 revision               :rm6
 seed offset            :0
 seed iterate           :20
 seed step              :5
 min seed hit           :2
 minimum seed length    :20
 maximum seed length    :26
 seed max hit count     :10
 minimum alignment score:150
 output summary file    :SRX6828454.sum.gz
 output alignment file  :SRX6828454.bisulalign

Loading index (FM-index)
    compression factor for suffix array is 2.
    compression factor for counter table is 32.
 -FM-index for c2t genome.... finished (elapsed: 51654 ms)
 -FM-Index for g2a genome.... finished (elapsed: 106230 ms)
 -suffix array for c2t genome.... finished (elapsed: 116314 ms)
 -suffix array for g2a genome.... finished (elapsed: 126137 ms)
 -reference sequence.... finished (elapsed: 126512 ms)
Index loading finished.
File(s) loaded: SRR10096278_1.fastq.gz, SRR10096278_2.fastq.gz.
Time elapsed:3314387 ms
mkdir: cannot create directory ‘/home/okishinya/tmpDirForFastq/SRX6828454’: File exists
=-=-=BMap	OK
-rw-r--r-- 1 okishinya so-ddmku 4989462945 Mar 30 15:57 SRX6828454.bisulalign.gz
-rw-r--r-- 1 okishinya so-ddmku  674813425 Mar 30 15:57 SRX6828454.sum.gz
SRX6828454.sum.gz was set to analysis list.
Analyzing SRX6828454.sum.gz.
=-=-=MapSum	OK
-rw-r--r-- 1 okishinya so-ddmku       5577 Mar 30 16:05 SRX6828454.mapsum.html
Processing "SRX6828454.bisulalign.gz" (4989462945 bytes)
************************: finished.
Start exporting ...
Finished.
=-=-=MPTC	OK
-rw-r--r-- 1 okishinya so-ddmku 22961918759 Mar 30 16:09 SRX6828454.graph
=-=-=CalcCoverage	OK
-rw-r--r-- 1 okishinya so-ddmku      557401 Mar 30 16:16 SRX6828454.stat.html
BinSeq                  :/lustre7/home/lustre4/okishinya/chipatlas/bin/Revisions/R_norvegicus/rm6/R_norvegicus_rm6.binseq
GraphFile               :SRX6828454.graph
Output File (methyl)    :SRX6828454.cpg.methyl.bedGraph.gz
Output File (cover)    :SRX6828454.cpg.cover.bedGraph.gz
Output File (tab)    :/dev/null
Output File (methpipe)    :SRX6828454.cpg.methpipe.tab.gz

=-=-=MethExport	OK
-rw-r--r-- 1 okishinya so-ddmku   224036835 Mar 30 16:29 SRX6828454.cpg.cover.bedGraph.gz
-rw-r--r-- 1 okishinya so-ddmku    95876387 Mar 30 16:29 SRX6828454.cpg.methpipe.tab.gz
-rw-r--r-- 1 okishinya so-ddmku   244263173 Mar 30 16:29 SRX6828454.cpg.methyl.bedGraph.gz
=-=-=bmap_sum	OK
=-=-=hypo- hyper-me-region	OK
-rw-r--r-- 1 okishinya so-ddmku    960780 Mar 30 17:06 SRX6828454.hmr
-rw-r--r-- 1 okishinya so-ddmku     28483 Mar 30 17:06 SRX6828454.pmd
-rw-r--r-- 1 okishinya so-ddmku   8996210 Mar 30 17:06 SRX6828454.hypermr
=-=-=BigWig	OK
-rw-r--r-- 1 okishinya so-ddmku 158769638 Mar 30 17:10 SRX6828454.cpg.cover.bw
-rw-r--r-- 1 okishinya so-ddmku 133111713 Mar 30 17:08 SRX6828454.cpg.methyl.bw

=-=-=num_reads	32732442
=-=-=mapping_rate_1	0.896
=-=-=mapping_rate_2	0.878
=-=-=methyl_rate_cpg_total	0.701
=-=-=methyl_rate_cpg_lambda	-
=-=-=low_methyl_region	40104
=-=-=partial_methyl_region	1163
=-=-=high_methyl_region	376880
=-=-=coverage	1.29879
=-=-=end	210330_17:11:03
=-=-=duration	2.330