Job ID = 12237260
SRX = SRX6828453
Genome = rm6
Started at	210330_14:50:44

sra ファイルのダウンロード中...

Read layout: PAIRED


fastq に変換中...

Read 25048982 spots for SRR10096277/SRR10096277.sra
Written 25048982 spots for SRR10096277/SRR10096277.sra

fastq に変換しました。

-rw-r--r-- 1 okishinya so-ddmku 2057813330 Mar 30 14:54 SRR10096277_1.fastq.gz
-rw-r--r-- 1 okishinya so-ddmku 2287647965 Mar 30 14:54 SRR10096277_2.fastq.gz
Start BMap mapping with following parameters
 species                :R_norvegicus
 revision               :rm6
 seed offset            :0
 seed iterate           :20
 seed step              :5
 min seed hit           :2
 minimum seed length    :20
 maximum seed length    :26
 seed max hit count     :10
 minimum alignment score:150
 output summary file    :SRX6828453.sum.gz
 output alignment file  :SRX6828453.bisulalign

Loading index (FM-index)
    compression factor for suffix array is 2.
    compression factor for counter table is 32.
 -FM-index for c2t genome.... finished (elapsed: 51753 ms)
 -FM-Index for g2a genome.... finished (elapsed: 106772 ms)
 -suffix array for c2t genome.... finished (elapsed: 119186 ms)
 -suffix array for g2a genome.... finished (elapsed: 131112 ms)
 -reference sequence.... finished (elapsed: 131521 ms)
Index loading finished.
File(s) loaded: SRR10096277_1.fastq.gz, SRR10096277_2.fastq.gz.
Time elapsed:3326271 ms
mkdir: cannot create directory ‘/home/okishinya/tmpDirForFastq/SRX6828453’: File exists
=-=-=BMap	OK
-rw-r--r-- 1 okishinya so-ddmku 3852815336 Mar 30 15:54 SRX6828453.bisulalign.gz
-rw-r--r-- 1 okishinya so-ddmku  511978051 Mar 30 15:54 SRX6828453.sum.gz
SRX6828453.sum.gz was set to analysis list.
Analyzing SRX6828453.sum.gz.
=-=-=MapSum	OK
-rw-r--r-- 1 okishinya so-ddmku       5113 Mar 30 16:01 SRX6828453.mapsum.html
Processing "SRX6828453.bisulalign.gz" (3852815336 bytes)
**************************: finished.
Start exporting ...
Finished.
=-=-=MPTC	OK
-rw-r--r-- 1 okishinya so-ddmku 22961918759 Mar 30 16:05 SRX6828453.graph
=-=-=CalcCoverage	OK
-rw-r--r-- 1 okishinya so-ddmku      561035 Mar 30 16:11 SRX6828453.stat.html
BinSeq                  :/lustre7/home/lustre4/okishinya/chipatlas/bin/Revisions/R_norvegicus/rm6/R_norvegicus_rm6.binseq
GraphFile               :SRX6828453.graph
Output File (methyl)    :SRX6828453.cpg.methyl.bedGraph.gz
Output File (cover)    :SRX6828453.cpg.cover.bedGraph.gz
Output File (tab)    :/dev/null
Output File (methpipe)    :SRX6828453.cpg.methpipe.tab.gz

=-=-=MethExport	OK
-rw-r--r-- 1 okishinya so-ddmku   223242272 Mar 30 16:24 SRX6828453.cpg.cover.bedGraph.gz
-rw-r--r-- 1 okishinya so-ddmku    77905981 Mar 30 16:24 SRX6828453.cpg.methpipe.tab.gz
-rw-r--r-- 1 okishinya so-ddmku   239956918 Mar 30 16:24 SRX6828453.cpg.methyl.bedGraph.gz
=-=-=bmap_sum	OK
=-=-=hypo- hyper-me-region	OK
-rw-r--r-- 1 okishinya so-ddmku    855754 Mar 30 16:56 SRX6828453.hmr
-rw-r--r-- 1 okishinya so-ddmku     24822 Mar 30 16:56 SRX6828453.pmd
-rw-r--r-- 1 okishinya so-ddmku   9588904 Mar 30 16:56 SRX6828453.hypermr
=-=-=BigWig	OK
-rw-r--r-- 1 okishinya so-ddmku 134822120 Mar 30 17:00 SRX6828453.cpg.cover.bw
-rw-r--r-- 1 okishinya so-ddmku  85885903 Mar 30 16:58 SRX6828453.cpg.methyl.bw

=-=-=num_reads	25048980
=-=-=mapping_rate_1	0.9
=-=-=mapping_rate_2	0.884
=-=-=methyl_rate_cpg_total	0.701
=-=-=methyl_rate_cpg_lambda	-
=-=-=low_methyl_region	35713
=-=-=partial_methyl_region	1034
=-=-=high_methyl_region	401686
=-=-=coverage	1.02419
=-=-=end	210330_17:00:31
=-=-=duration	2.162