Job ID = 12237257
SRX = SRX6828452
Genome = rm6
Started at	210330_14:50:44

sra ファイルのダウンロード中...

Read layout: PAIRED


fastq に変換中...

Read 24611541 spots for SRR10096276/SRR10096276.sra
Written 24611541 spots for SRR10096276/SRR10096276.sra

fastq に変換しました。

-rw-r--r-- 1 okishinya so-ddmku 1958184080 Mar 30 14:54 SRR10096276_1.fastq.gz
-rw-r--r-- 1 okishinya so-ddmku 2139539748 Mar 30 14:54 SRR10096276_2.fastq.gz
Start BMap mapping with following parameters
 species                :R_norvegicus
 revision               :rm6
 seed offset            :0
 seed iterate           :20
 seed step              :5
 min seed hit           :2
 minimum seed length    :20
 maximum seed length    :26
 seed max hit count     :10
 minimum alignment score:150
 output summary file    :SRX6828452.sum.gz
 output alignment file  :SRX6828452.bisulalign

Loading index (FM-index)
    compression factor for suffix array is 2.
    compression factor for counter table is 32.
 -FM-index for c2t genome.... finished (elapsed: 51842 ms)
 -FM-Index for g2a genome.... finished (elapsed: 106524 ms)
 -suffix array for c2t genome.... finished (elapsed: 119716 ms)
 -suffix array for g2a genome.... finished (elapsed: 132072 ms)
 -reference sequence.... finished (elapsed: 132520 ms)
Index loading finished.
File(s) loaded: SRR10096276_1.fastq.gz, SRR10096276_2.fastq.gz.
Time elapsed:2678295 ms
mkdir: cannot create directory ‘/home/okishinya/tmpDirForFastq/SRX6828452’: File exists
=-=-=BMap	OK
-rw-r--r-- 1 okishinya so-ddmku 3076373334 Mar 30 15:43 SRX6828452.bisulalign.gz
-rw-r--r-- 1 okishinya so-ddmku  503879383 Mar 30 15:43 SRX6828452.sum.gz
SRX6828452.sum.gz was set to analysis list.
Analyzing SRX6828452.sum.gz.
=-=-=MapSum	OK
-rw-r--r-- 1 okishinya so-ddmku       5092 Mar 30 15:48 SRX6828452.mapsum.html
Processing "SRX6828452.bisulalign.gz" (3076373334 bytes)
******************************: finished.
Start exporting ...
Finished.
=-=-=MPTC	OK
-rw-r--r-- 1 okishinya so-ddmku 22961918759 Mar 30 15:52 SRX6828452.graph
=-=-=CalcCoverage	OK
-rw-r--r-- 1 okishinya so-ddmku      557108 Mar 30 15:58 SRX6828452.stat.html
BinSeq                  :/lustre7/home/lustre4/okishinya/chipatlas/bin/Revisions/R_norvegicus/rm6/R_norvegicus_rm6.binseq
GraphFile               :SRX6828452.graph
Output File (methyl)    :SRX6828452.cpg.methyl.bedGraph.gz
Output File (cover)    :SRX6828452.cpg.cover.bedGraph.gz
Output File (tab)    :/dev/null
Output File (methpipe)    :SRX6828452.cpg.methpipe.tab.gz

=-=-=MethExport	OK
-rw-r--r-- 1 okishinya so-ddmku   223426566 Mar 30 16:11 SRX6828452.cpg.cover.bedGraph.gz
-rw-r--r-- 1 okishinya so-ddmku    82164778 Mar 30 16:11 SRX6828452.cpg.methpipe.tab.gz
-rw-r--r-- 1 okishinya so-ddmku   240766592 Mar 30 16:11 SRX6828452.cpg.methyl.bedGraph.gz
=-=-=bmap_sum	OK
=-=-=hypo- hyper-me-region	OK
-rw-r--r-- 1 okishinya so-ddmku    922290 Mar 30 16:45 SRX6828452.hmr
-rw-r--r-- 1 okishinya so-ddmku     27899 Mar 30 16:45 SRX6828452.pmd
-rw-r--r-- 1 okishinya so-ddmku   8863073 Mar 30 16:45 SRX6828452.hypermr
=-=-=BigWig	OK
-rw-r--r-- 1 okishinya so-ddmku 140285231 Mar 30 16:49 SRX6828452.cpg.cover.bw
-rw-r--r-- 1 okishinya so-ddmku 116174232 Mar 30 16:47 SRX6828452.cpg.methyl.bw

=-=-=num_reads	24611538
=-=-=mapping_rate_1	0.884
=-=-=mapping_rate_2	0.876
=-=-=methyl_rate_cpg_total	0.674
=-=-=methyl_rate_cpg_lambda	0
=-=-=low_methyl_region	38496
=-=-=partial_methyl_region	1159
=-=-=high_methyl_region	371365
=-=-=coverage	0.815254
=-=-=end	210330_16:49:33
=-=-=duration	1.980