Job ID = 12237271
SRX = SRX6828451
Genome = rm6
Started at	210330_14:50:59

sra ファイルのダウンロード中...

Read layout: PAIRED


fastq に変換中...

Read 27947772 spots for SRR10096275/SRR10096275.sra
Written 27947772 spots for SRR10096275/SRR10096275.sra

fastq に変換しました。

-rw-r--r-- 1 okishinya so-ddmku 2230868338 Mar 30 14:54 SRR10096275_1.fastq.gz
-rw-r--r-- 1 okishinya so-ddmku 2435215920 Mar 30 14:54 SRR10096275_2.fastq.gz
Start BMap mapping with following parameters
 species                :R_norvegicus
 revision               :rm6
 seed offset            :0
 seed iterate           :20
 seed step              :5
 min seed hit           :2
 minimum seed length    :20
 maximum seed length    :26
 seed max hit count     :10
 minimum alignment score:150
 output summary file    :SRX6828451.sum.gz
 output alignment file  :SRX6828451.bisulalign

Loading index (FM-index)
    compression factor for suffix array is 2.
    compression factor for counter table is 32.
 -FM-index for c2t genome.... finished (elapsed: 32906 ms)
 -FM-Index for g2a genome.... finished (elapsed: 65978 ms)
 -suffix array for c2t genome.... finished (elapsed: 75614 ms)
 -suffix array for g2a genome.... finished (elapsed: 84679 ms)
 -reference sequence.... finished (elapsed: 85132 ms)
Index loading finished.
File(s) loaded: SRR10096275_1.fastq.gz, SRR10096275_2.fastq.gz.
Time elapsed:4468041 ms
mkdir: cannot create directory ‘/home/okishinya/tmpDirForFastq/SRX6828451’: File exists
=-=-=BMap	OK
-rw-r--r-- 1 okishinya so-ddmku 3638410297 Mar 30 16:13 SRX6828451.bisulalign.gz
-rw-r--r-- 1 okishinya so-ddmku  579813486 Mar 30 16:13 SRX6828451.sum.gz
SRX6828451.sum.gz was set to analysis list.
Analyzing SRX6828451.sum.gz.
=-=-=MapSum	OK
-rw-r--r-- 1 okishinya so-ddmku       4906 Mar 30 16:18 SRX6828451.mapsum.html
Processing "SRX6828451.bisulalign.gz" (3638410297 bytes)
: finished.
Start exporting ...
Finished.
=-=-=MPTC	OK
-rw-r--r-- 1 okishinya so-ddmku 22961918759 Mar 30 16:23 SRX6828451.graph
=-=-=CalcCoverage	OK
-rw-r--r-- 1 okishinya so-ddmku      557190 Mar 30 16:29 SRX6828451.stat.html
BinSeq                  :/lustre7/home/lustre4/okishinya/chipatlas/bin/Revisions/R_norvegicus/rm6/R_norvegicus_rm6.binseq
GraphFile               :SRX6828451.graph
Output File (methyl)    :SRX6828451.cpg.methyl.bedGraph.gz
Output File (cover)    :SRX6828451.cpg.cover.bedGraph.gz
Output File (tab)    :/dev/null
Output File (methpipe)    :SRX6828451.cpg.methpipe.tab.gz

=-=-=MethExport	OK
-rw-r--r-- 1 okishinya so-ddmku   223827792 Mar 30 16:41 SRX6828451.cpg.cover.bedGraph.gz
-rw-r--r-- 1 okishinya so-ddmku    92015905 Mar 30 16:41 SRX6828451.cpg.methpipe.tab.gz
-rw-r--r-- 1 okishinya so-ddmku   243038302 Mar 30 16:41 SRX6828451.cpg.methyl.bedGraph.gz
=-=-=bmap_sum	OK
=-=-=hypo- hyper-me-region	OK
-rw-r--r-- 1 okishinya so-ddmku    981702 Mar 30 17:12 SRX6828451.hmr
-rw-r--r-- 1 okishinya so-ddmku     29261 Mar 30 17:12 SRX6828451.pmd
-rw-r--r-- 1 okishinya so-ddmku   8400748 Mar 30 17:12 SRX6828451.hypermr
=-=-=BigWig	OK
-rw-r--r-- 1 okishinya so-ddmku 153816508 Mar 30 17:16 SRX6828451.cpg.cover.bw
-rw-r--r-- 1 okishinya so-ddmku 128943254 Mar 30 17:14 SRX6828451.cpg.methyl.bw

=-=-=num_reads	27947771
=-=-=mapping_rate_1	0.89
=-=-=mapping_rate_2	0.88
=-=-=methyl_rate_cpg_total	0.707
=-=-=methyl_rate_cpg_lambda	-
=-=-=low_methyl_region	40978
=-=-=partial_methyl_region	1216
=-=-=high_methyl_region	352005
=-=-=coverage	0.91806
=-=-=end	210330_17:16:34
=-=-=duration	2.426