Job ID = 12237411
SRX = SRX6828450
Genome = rm6
Started at	210330_16:47:04

sra ファイルのダウンロード中...

Read layout: PAIRED


fastq に変換中...

Read 127034470 spots for SRR10096274/SRR10096274.sra
Written 127034470 spots for SRR10096274/SRR10096274.sra

fastq に変換しました。

-rw-r--r-- 1 okishinya so-ddmku 10663292313 Mar 30 17:03 SRR10096274_1.fastq.gz
-rw-r--r-- 1 okishinya so-ddmku 11856833582 Mar 30 17:03 SRR10096274_2.fastq.gz
Start BMap mapping with following parameters
 species                :R_norvegicus
 revision               :rm6
 seed offset            :0
 seed iterate           :20
 seed step              :5
 min seed hit           :2
 minimum seed length    :20
 maximum seed length    :26
 seed max hit count     :10
 minimum alignment score:150
 output summary file    :SRX6828450.sum.gz
 output alignment file  :SRX6828450.bisulalign

Loading index (FM-index)
    compression factor for suffix array is 2.
    compression factor for counter table is 32.
 -FM-index for c2t genome.... finished (elapsed: 31205 ms)
 -FM-Index for g2a genome.... finished (elapsed: 62423 ms)
 -suffix array for c2t genome.... finished (elapsed: 92602 ms)
 -suffix array for g2a genome.... finished (elapsed: 126034 ms)
 -reference sequence.... finished (elapsed: 129999 ms)
Index loading finished.
File(s) loaded: SRR10096274_1.fastq.gz, SRR10096274_2.fastq.gz.
Time elapsed:16440031 ms
mkdir: cannot create directory ‘/home/okishinya/tmpDirForFastq/SRX6828450’: File exists
=-=-=BMap	OK
-rw-r--r-- 1 okishinya so-ddmku 18796354339 Mar 30 21:57 SRX6828450.bisulalign.gz
-rw-r--r-- 1 okishinya so-ddmku  2600196621 Mar 30 21:57 SRX6828450.sum.gz
SRX6828450.sum.gz was set to analysis list.
Analyzing SRX6828450.sum.gz.
=-=-=MapSum	OK
-rw-r--r-- 1 okishinya so-ddmku        5634 Mar 30 22:21 SRX6828450.mapsum.html
Processing "SRX6828450.bisulalign.gz" (18796354339 bytes)
**********************************: finished.
Start exporting ...
Finished.
=-=-=MPTC	OK
-rw-r--r-- 1 okishinya so-ddmku 22961918759 Mar 30 22:29 SRX6828450.graph
=-=-=CalcCoverage	OK
-rw-r--r-- 1 okishinya so-ddmku      563983 Mar 30 22:35 SRX6828450.stat.html
BinSeq                  :/lustre7/home/lustre4/okishinya/chipatlas/bin/Revisions/R_norvegicus/rm6/R_norvegicus_rm6.binseq
GraphFile               :SRX6828450.graph
Output File (methyl)    :SRX6828450.cpg.methyl.bedGraph.gz
Output File (cover)    :SRX6828450.cpg.cover.bedGraph.gz
Output File (tab)    :/dev/null
Output File (methpipe)    :SRX6828450.cpg.methpipe.tab.gz

=-=-=MethExport	OK
-rw-r--r-- 1 okishinya so-ddmku   231318126 Mar 30 22:47 SRX6828450.cpg.cover.bedGraph.gz
-rw-r--r-- 1 okishinya so-ddmku    98434727 Mar 30 22:47 SRX6828450.cpg.methpipe.tab.gz
-rw-r--r-- 1 okishinya so-ddmku   248949633 Mar 30 22:47 SRX6828450.cpg.methyl.bedGraph.gz
=-=-=bmap_sum	OK
=-=-=hypo- hyper-me-region	OK
-rw-r--r-- 1 okishinya so-ddmku    994231 Mar 30 23:15 SRX6828450.hmr
-rw-r--r-- 1 okishinya so-ddmku     24240 Mar 30 23:15 SRX6828450.pmd
-rw-r--r-- 1 okishinya so-ddmku  11932532 Mar 30 23:15 SRX6828450.hypermr
=-=-=BigWig	OK
-rw-r--r-- 1 okishinya so-ddmku 160976641 Mar 30 23:19 SRX6828450.cpg.cover.bw
-rw-r--r-- 1 okishinya so-ddmku 133129660 Mar 30 23:17 SRX6828450.cpg.methyl.bw

=-=-=num_reads	127034449
=-=-=mapping_rate_1	0.91
=-=-=mapping_rate_2	0.896
=-=-=methyl_rate_cpg_total	0.717
=-=-=methyl_rate_cpg_lambda	-
=-=-=low_methyl_region	41471
=-=-=partial_methyl_region	960
=-=-=high_methyl_region	498844
=-=-=coverage	5.29908
=-=-=end	210330_23:19:42
=-=-=duration	6.543