Job ID = 12237253
SRX = SRX5693663
Genome = rm6
Started at	210330_14:50:44

sra ファイルのダウンロード中...

Read layout: SINGLE


fastq に変換中...

Read 23910340 spots for SRR8907842/SRR8907842.sra
Written 23910340 spots for SRR8907842/SRR8907842.sra

fastq に変換しました。

-rw-r--r-- 1 okishinya so-ddmku 1019620599 Mar 30 14:52 SRR8907842.fastq.gz
Start BMap mapping with following parameters
 species                :R_norvegicus
 revision               :rm6
 seed offset            :0
 seed iterate           :20
 seed step              :5
 min seed hit           :2
 minimum seed length    :20
 maximum seed length    :26
 seed max hit count     :10
 minimum alignment score:150
 output summary file    :SRX5693663.sum.gz
 output alignment file  :SRX5693663.bisulalign

Loading index (FM-index)
    compression factor for suffix array is 2.
    compression factor for counter table is 32.
 -FM-index for c2t genome.... finished (elapsed: 55295 ms)
 -FM-Index for g2a genome.... finished (elapsed: 112193 ms)
 -suffix array for c2t genome.... finished (elapsed: 174477 ms)
 -suffix array for g2a genome.... finished (elapsed: 231550 ms)
 -reference sequence.... finished (elapsed: 236990 ms)
Index loading finished.
File(s) loaded: SRR8907842.fastq.gz.
Time elapsed:1150482 ms
mkdir: cannot create directory ‘/home/okishinya/tmpDirForFastq/SRX5693663’: File exists
=-=-=BMap	OK
-rw-r--r-- 1 okishinya so-ddmku 1309015441 Mar 30 15:12 SRX5693663.bisulalign.gz
-rw-r--r-- 1 okishinya so-ddmku  286736761 Mar 30 15:12 SRX5693663.sum.gz
SRX5693663.sum.gz was set to analysis list.
Analyzing SRX5693663.sum.gz.
=-=-=MapSum	OK
-rw-r--r-- 1 okishinya so-ddmku       4570 Mar 30 15:15 SRX5693663.mapsum.html
Processing "SRX5693663.bisulalign.gz" (1309015441 bytes)
****************************: finished.
Start exporting ...
Finished.
=-=-=MPTC	OK
-rw-r--r-- 1 okishinya so-ddmku 22961918759 Mar 30 15:18 SRX5693663.graph
=-=-=CalcCoverage	OK
-rw-r--r-- 1 okishinya so-ddmku      555843 Mar 30 15:25 SRX5693663.stat.html
BinSeq                  :/lustre7/home/lustre4/okishinya/chipatlas/bin/Revisions/R_norvegicus/rm6/R_norvegicus_rm6.binseq
GraphFile               :SRX5693663.graph
Output File (methyl)    :SRX5693663.cpg.methyl.bedGraph.gz
Output File (cover)    :SRX5693663.cpg.cover.bedGraph.gz
Output File (tab)    :/dev/null
Output File (methpipe)    :SRX5693663.cpg.methpipe.tab.gz

=-=-=MethExport	OK
-rw-r--r-- 1 okishinya so-ddmku   220518801 Mar 30 15:37 SRX5693663.cpg.cover.bedGraph.gz
-rw-r--r-- 1 okishinya so-ddmku    18590616 Mar 30 15:37 SRX5693663.cpg.methpipe.tab.gz
-rw-r--r-- 1 okishinya so-ddmku   228463823 Mar 30 15:37 SRX5693663.cpg.methyl.bedGraph.gz
=-=-=bmap_sum	OK
=-=-=hypo- hyper-me-region	OK
-rw-r--r-- 1 okishinya so-ddmku    724557 Mar 30 15:43 SRX5693663.hmr
-rw-r--r-- 1 okishinya so-ddmku     10638 Mar 30 15:43 SRX5693663.pmd
-rw-r--r-- 1 okishinya so-ddmku   2877333 Mar 30 15:43 SRX5693663.hypermr
=-=-=BigWig	OK
-rw-r--r-- 1 okishinya so-ddmku 33116617 Mar 30 15:45 SRX5693663.cpg.cover.bw
-rw-r--r-- 1 okishinya so-ddmku 30203722 Mar 30 15:44 SRX5693663.cpg.methyl.bw

=-=-=num_reads	23910339
=-=-=mapping_rate_1	0.825
=-=-=mapping_rate_2	N/A
=-=-=methyl_rate_cpg_total	0.468
=-=-=methyl_rate_cpg_lambda	-
=-=-=low_methyl_region	30259
=-=-=partial_methyl_region	446
=-=-=high_methyl_region	119754
=-=-=coverage	0.935787
=-=-=end	210330_15:45:39
=-=-=duration	.915