Job ID = 12237266
SRX = SRX5693662
Genome = rm6
Started at	210330_14:50:44

sra ファイルのダウンロード中...

Read layout: SINGLE


fastq に変換中...

Read 26982687 spots for SRR8907841/SRR8907841.sra
Written 26982687 spots for SRR8907841/SRR8907841.sra

fastq に変換しました。

-rw-r--r-- 1 okishinya so-ddmku 1150008889 Mar 30 14:52 SRR8907841.fastq.gz
Start BMap mapping with following parameters
 species                :R_norvegicus
 revision               :rm6
 seed offset            :0
 seed iterate           :20
 seed step              :5
 min seed hit           :2
 minimum seed length    :20
 maximum seed length    :26
 seed max hit count     :10
 minimum alignment score:150
 output summary file    :SRX5693662.sum.gz
 output alignment file  :SRX5693662.bisulalign

Loading index (FM-index)
    compression factor for suffix array is 2.
    compression factor for counter table is 32.
 -FM-index for c2t genome.... finished (elapsed: 52586 ms)
 -FM-Index for g2a genome.... finished (elapsed: 108053 ms)
 -suffix array for c2t genome.... finished (elapsed: 153541 ms)
 -suffix array for g2a genome.... finished (elapsed: 210610 ms)
 -reference sequence.... finished (elapsed: 216071 ms)
Index loading finished.
File(s) loaded: SRR8907841.fastq.gz.
Time elapsed:1102114 ms
mkdir: cannot create directory ‘/home/okishinya/tmpDirForFastq/SRX5693662’: File exists
=-=-=BMap	OK
-rw-r--r-- 1 okishinya so-ddmku 1464567512 Mar 30 15:12 SRX5693662.bisulalign.gz
-rw-r--r-- 1 okishinya so-ddmku  321122575 Mar 30 15:12 SRX5693662.sum.gz
SRX5693662.sum.gz was set to analysis list.
Analyzing SRX5693662.sum.gz.
=-=-=MapSum	OK
-rw-r--r-- 1 okishinya so-ddmku       4322 Mar 30 15:15 SRX5693662.mapsum.html
Processing "SRX5693662.bisulalign.gz" (1464567512 bytes)
: finished.
Start exporting ...
Finished.
=-=-=MPTC	OK
-rw-r--r-- 1 okishinya so-ddmku 22961918759 Mar 30 15:19 SRX5693662.graph
=-=-=CalcCoverage	OK
-rw-r--r-- 1 okishinya so-ddmku      555969 Mar 30 15:25 SRX5693662.stat.html
BinSeq                  :/lustre7/home/lustre4/okishinya/chipatlas/bin/Revisions/R_norvegicus/rm6/R_norvegicus_rm6.binseq
GraphFile               :SRX5693662.graph
Output File (methyl)    :SRX5693662.cpg.methyl.bedGraph.gz
Output File (cover)    :SRX5693662.cpg.cover.bedGraph.gz
Output File (tab)    :/dev/null
Output File (methpipe)    :SRX5693662.cpg.methpipe.tab.gz

=-=-=MethExport	OK
-rw-r--r-- 1 okishinya so-ddmku   220640784 Mar 30 15:38 SRX5693662.cpg.cover.bedGraph.gz
-rw-r--r-- 1 okishinya so-ddmku    20194283 Mar 30 15:38 SRX5693662.cpg.methpipe.tab.gz
-rw-r--r-- 1 okishinya so-ddmku   229186988 Mar 30 15:38 SRX5693662.cpg.methyl.bedGraph.gz
=-=-=bmap_sum	OK
=-=-=hypo- hyper-me-region	OK
-rw-r--r-- 1 okishinya so-ddmku    605064 Mar 30 15:45 SRX5693662.hmr
-rw-r--r-- 1 okishinya so-ddmku     11443 Mar 30 15:45 SRX5693662.pmd
-rw-r--r-- 1 okishinya so-ddmku   3146668 Mar 30 15:45 SRX5693662.hypermr
=-=-=BigWig	OK
-rw-r--r-- 1 okishinya so-ddmku 36336273 Mar 30 15:47 SRX5693662.cpg.cover.bw
-rw-r--r-- 1 okishinya so-ddmku 25441165 Mar 30 15:46 SRX5693662.cpg.methyl.bw

=-=-=num_reads	26982687
=-=-=mapping_rate_1	0.824
=-=-=mapping_rate_2	N/A
=-=-=methyl_rate_cpg_total	0.466
=-=-=methyl_rate_cpg_lambda	-
=-=-=low_methyl_region	25267
=-=-=partial_methyl_region	479
=-=-=high_methyl_region	131010
=-=-=coverage	1.01824
=-=-=end	210330_15:47:34
=-=-=duration	.947