Job ID = 12237247
SRX = SRX5693661
Genome = rm6
Started at	210330_14:50:29

sra ファイルのダウンロード中...

Read layout: SINGLE


fastq に変換中...

Read 21582884 spots for SRR8907840/SRR8907840.sra
Written 21582884 spots for SRR8907840/SRR8907840.sra

fastq に変換しました。

-rw-r--r-- 1 okishinya so-ddmku 917228188 Mar 30 14:52 SRR8907840.fastq.gz
Start BMap mapping with following parameters
 species                :R_norvegicus
 revision               :rm6
 seed offset            :0
 seed iterate           :20
 seed step              :5
 min seed hit           :2
 minimum seed length    :20
 maximum seed length    :26
 seed max hit count     :10
 minimum alignment score:150
 output summary file    :SRX5693661.sum.gz
 output alignment file  :SRX5693661.bisulalign

Loading index (FM-index)
    compression factor for suffix array is 2.
    compression factor for counter table is 32.
 -FM-index for c2t genome.... finished (elapsed: 53933 ms)
 -FM-Index for g2a genome.... finished (elapsed: 110947 ms)
 -suffix array for c2t genome.... finished (elapsed: 166116 ms)
 -suffix array for g2a genome.... finished (elapsed: 225825 ms)
 -reference sequence.... finished (elapsed: 234829 ms)
Index loading finished.
File(s) loaded: SRR8907840.fastq.gz.
Time elapsed:894648 ms
mkdir: cannot create directory ‘/home/okishinya/tmpDirForFastq/SRX5693661’: File exists
=-=-=BMap	OK
-rw-r--r-- 1 okishinya so-ddmku 1178298508 Mar 30 15:07 SRX5693661.bisulalign.gz
-rw-r--r-- 1 okishinya so-ddmku  256996596 Mar 30 15:07 SRX5693661.sum.gz
SRX5693661.sum.gz was set to analysis list.
Analyzing SRX5693661.sum.gz.
=-=-=MapSum	OK
-rw-r--r-- 1 okishinya so-ddmku       4717 Mar 30 15:10 SRX5693661.mapsum.html
Processing "SRX5693661.bisulalign.gz" (1178298508 bytes)
******************: finished.
Start exporting ...
Finished.
=-=-=MPTC	OK
-rw-r--r-- 1 okishinya so-ddmku 22961918759 Mar 30 15:13 SRX5693661.graph
=-=-=CalcCoverage	OK
-rw-r--r-- 1 okishinya so-ddmku      555800 Mar 30 15:19 SRX5693661.stat.html
BinSeq                  :/lustre7/home/lustre4/okishinya/chipatlas/bin/Revisions/R_norvegicus/rm6/R_norvegicus_rm6.binseq
GraphFile               :SRX5693661.graph
Output File (methyl)    :SRX5693661.cpg.methyl.bedGraph.gz
Output File (cover)    :SRX5693661.cpg.cover.bedGraph.gz
Output File (tab)    :/dev/null
Output File (methpipe)    :SRX5693661.cpg.methpipe.tab.gz

=-=-=MethExport	OK
-rw-r--r-- 1 okishinya so-ddmku   220401982 Mar 30 15:31 SRX5693661.cpg.cover.bedGraph.gz
-rw-r--r-- 1 okishinya so-ddmku    17954294 Mar 30 15:31 SRX5693661.cpg.methpipe.tab.gz
-rw-r--r-- 1 okishinya so-ddmku   228061301 Mar 30 15:31 SRX5693661.cpg.methyl.bedGraph.gz
=-=-=bmap_sum	OK
=-=-=hypo- hyper-me-region	OK
-rw-r--r-- 1 okishinya so-ddmku    694407 Mar 30 15:37 SRX5693661.hmr
-rw-r--r-- 1 okishinya so-ddmku     11026 Mar 30 15:37 SRX5693661.pmd
-rw-r--r-- 1 okishinya so-ddmku   2825850 Mar 30 15:37 SRX5693661.hypermr
=-=-=BigWig	OK
-rw-r--r-- 1 okishinya so-ddmku 32427726 Mar 30 15:39 SRX5693661.cpg.cover.bw
-rw-r--r-- 1 okishinya so-ddmku 29545554 Mar 30 15:38 SRX5693661.cpg.methyl.bw

=-=-=num_reads	21582883
=-=-=mapping_rate_1	0.826
=-=-=mapping_rate_2	N/A
=-=-=methyl_rate_cpg_total	0.463
=-=-=methyl_rate_cpg_lambda	-
=-=-=low_methyl_region	29003
=-=-=partial_methyl_region	461
=-=-=high_methyl_region	117621
=-=-=coverage	0.826866
=-=-=end	210330_15:39:46
=-=-=duration	.821