Job ID = 12237249
SRX = SRX5693660
Genome = rm6
Started at	210330_14:50:29

sra ファイルのダウンロード中...

Read layout: SINGLE


fastq に変換中...

Read 23291226 spots for SRR8907839/SRR8907839.sra
Written 23291226 spots for SRR8907839/SRR8907839.sra

fastq に変換しました。

-rw-r--r-- 1 okishinya so-ddmku 986689568 Mar 30 14:52 SRR8907839.fastq.gz
Start BMap mapping with following parameters
 species                :R_norvegicus
 revision               :rm6
 seed offset            :0
 seed iterate           :20
 seed step              :5
 min seed hit           :2
 minimum seed length    :20
 maximum seed length    :26
 seed max hit count     :10
 minimum alignment score:150
 output summary file    :SRX5693660.sum.gz
 output alignment file  :SRX5693660.bisulalign

Loading index (FM-index)
    compression factor for suffix array is 2.
    compression factor for counter table is 32.
 -FM-index for c2t genome.... finished (elapsed: 52602 ms)
 -FM-Index for g2a genome.... finished (elapsed: 107995 ms)
 -suffix array for c2t genome.... finished (elapsed: 156143 ms)
 -suffix array for g2a genome.... finished (elapsed: 215851 ms)
 -reference sequence.... finished (elapsed: 224856 ms)
Index loading finished.
File(s) loaded: SRR8907839.fastq.gz.
Time elapsed:962384 ms
mkdir: cannot create directory ‘/home/okishinya/tmpDirForFastq/SRX5693660’: File exists
=-=-=BMap	OK
-rw-r--r-- 1 okishinya so-ddmku 1259402273 Mar 30 15:09 SRX5693660.bisulalign.gz
-rw-r--r-- 1 okishinya so-ddmku  277201758 Mar 30 15:09 SRX5693660.sum.gz
SRX5693660.sum.gz was set to analysis list.
Analyzing SRX5693660.sum.gz.
=-=-=MapSum	OK
-rw-r--r-- 1 okishinya so-ddmku       4577 Mar 30 15:11 SRX5693660.mapsum.html
Processing "SRX5693660.bisulalign.gz" (1259402273 bytes)
: finished.
Start exporting ...
Finished.
=-=-=MPTC	OK
-rw-r--r-- 1 okishinya so-ddmku 22961918759 Mar 30 15:15 SRX5693660.graph
=-=-=CalcCoverage	OK
-rw-r--r-- 1 okishinya so-ddmku      555808 Mar 30 15:21 SRX5693660.stat.html
BinSeq                  :/lustre7/home/lustre4/okishinya/chipatlas/bin/Revisions/R_norvegicus/rm6/R_norvegicus_rm6.binseq
GraphFile               :SRX5693660.graph
Output File (methyl)    :SRX5693660.cpg.methyl.bedGraph.gz
Output File (cover)    :SRX5693660.cpg.cover.bedGraph.gz
Output File (tab)    :/dev/null
Output File (methpipe)    :SRX5693660.cpg.methpipe.tab.gz

=-=-=MethExport	OK
-rw-r--r-- 1 okishinya so-ddmku   220497569 Mar 30 15:33 SRX5693660.cpg.cover.bedGraph.gz
-rw-r--r-- 1 okishinya so-ddmku    18044268 Mar 30 15:33 SRX5693660.cpg.methpipe.tab.gz
-rw-r--r-- 1 okishinya so-ddmku   228316237 Mar 30 15:33 SRX5693660.cpg.methyl.bedGraph.gz
=-=-=bmap_sum	OK
=-=-=hypo- hyper-me-region	OK
-rw-r--r-- 1 okishinya so-ddmku    755361 Mar 30 15:39 SRX5693660.hmr
-rw-r--r-- 1 okishinya so-ddmku     11149 Mar 30 15:39 SRX5693660.pmd
-rw-r--r-- 1 okishinya so-ddmku   2824027 Mar 30 15:39 SRX5693660.hypermr
=-=-=BigWig	OK
-rw-r--r-- 1 okishinya so-ddmku 32255997 Mar 30 15:41 SRX5693660.cpg.cover.bw
-rw-r--r-- 1 okishinya so-ddmku 29704677 Mar 30 15:40 SRX5693660.cpg.methyl.bw

=-=-=num_reads	23291225
=-=-=mapping_rate_1	0.819
=-=-=mapping_rate_2	N/A
=-=-=methyl_rate_cpg_total	0.465
=-=-=methyl_rate_cpg_lambda	-
=-=-=low_methyl_region	31552
=-=-=partial_methyl_region	467
=-=-=high_methyl_region	117544
=-=-=coverage	0.904979
=-=-=end	210330_15:41:26
=-=-=duration	.849