Job ID = 12237248
SRX = SRX5693659
Genome = rm6
Started at	210330_14:50:29

sra ファイルのダウンロード中...

Read layout: SINGLE


fastq に変換中...

Read 22462655 spots for SRR8907838/SRR8907838.sra
Written 22462655 spots for SRR8907838/SRR8907838.sra

fastq に変換しました。

-rw-r--r-- 1 okishinya so-ddmku 952934048 Mar 30 14:52 SRR8907838.fastq.gz
Start BMap mapping with following parameters
 species                :R_norvegicus
 revision               :rm6
 seed offset            :0
 seed iterate           :20
 seed step              :5
 min seed hit           :2
 minimum seed length    :20
 maximum seed length    :26
 seed max hit count     :10
 minimum alignment score:150
 output summary file    :SRX5693659.sum.gz
 output alignment file  :SRX5693659.bisulalign

Loading index (FM-index)
    compression factor for suffix array is 2.
    compression factor for counter table is 32.
 -FM-index for c2t genome.... finished (elapsed: 53043 ms)
 -FM-Index for g2a genome.... finished (elapsed: 108920 ms)
 -suffix array for c2t genome.... finished (elapsed: 156790 ms)
 -suffix array for g2a genome.... finished (elapsed: 216499 ms)
 -reference sequence.... finished (elapsed: 225503 ms)
Index loading finished.
File(s) loaded: SRR8907838.fastq.gz.
Time elapsed:1137839 ms
mkdir: cannot create directory ‘/home/okishinya/tmpDirForFastq/SRX5693659’: File exists
=-=-=BMap	OK
-rw-r--r-- 1 okishinya so-ddmku 1227660163 Mar 30 15:12 SRX5693659.bisulalign.gz
-rw-r--r-- 1 okishinya so-ddmku  268613753 Mar 30 15:12 SRX5693659.sum.gz
SRX5693659.sum.gz was set to analysis list.
Analyzing SRX5693659.sum.gz.
=-=-=MapSum	OK
-rw-r--r-- 1 okishinya so-ddmku       4403 Mar 30 15:14 SRX5693659.mapsum.html
Processing "SRX5693659.bisulalign.gz" (1227660163 bytes)
****************************************: finished.
Start exporting ...
Finished.
=-=-=MPTC	OK
-rw-r--r-- 1 okishinya so-ddmku 22961918759 Mar 30 15:18 SRX5693659.graph
=-=-=CalcCoverage	OK
-rw-r--r-- 1 okishinya so-ddmku      555797 Mar 30 15:24 SRX5693659.stat.html
BinSeq                  :/lustre7/home/lustre4/okishinya/chipatlas/bin/Revisions/R_norvegicus/rm6/R_norvegicus_rm6.binseq
GraphFile               :SRX5693659.graph
Output File (methyl)    :SRX5693659.cpg.methyl.bedGraph.gz
Output File (cover)    :SRX5693659.cpg.cover.bedGraph.gz
Output File (tab)    :/dev/null
Output File (methpipe)    :SRX5693659.cpg.methpipe.tab.gz

=-=-=MethExport	OK
-rw-r--r-- 1 okishinya so-ddmku   220483670 Mar 30 15:36 SRX5693659.cpg.cover.bedGraph.gz
-rw-r--r-- 1 okishinya so-ddmku    17721547 Mar 30 15:36 SRX5693659.cpg.methpipe.tab.gz
-rw-r--r-- 1 okishinya so-ddmku   228182045 Mar 30 15:36 SRX5693659.cpg.methyl.bedGraph.gz
=-=-=bmap_sum	OK
=-=-=hypo- hyper-me-region	OK
-rw-r--r-- 1 okishinya so-ddmku    757134 Mar 30 15:42 SRX5693659.hmr
-rw-r--r-- 1 okishinya so-ddmku     10600 Mar 30 15:42 SRX5693659.pmd
-rw-r--r-- 1 okishinya so-ddmku   2787156 Mar 30 15:42 SRX5693659.hypermr
=-=-=BigWig	OK
-rw-r--r-- 1 okishinya so-ddmku 31751305 Mar 30 15:44 SRX5693659.cpg.cover.bw
-rw-r--r-- 1 okishinya so-ddmku 29278489 Mar 30 15:43 SRX5693659.cpg.methyl.bw

=-=-=num_reads	22462655
=-=-=mapping_rate_1	0.819
=-=-=mapping_rate_2	N/A
=-=-=methyl_rate_cpg_total	0.465
=-=-=methyl_rate_cpg_lambda	-
=-=-=low_methyl_region	31629
=-=-=partial_methyl_region	444
=-=-=high_methyl_region	115997
=-=-=coverage	0.88063
=-=-=end	210330_15:44:29
=-=-=duration	.900