Job ID = 12237264
SRX = SRX5693658
Genome = rm6
Started at	210330_14:50:44

sra ファイルのダウンロード中...

Read layout: SINGLE


fastq に変換中...

Read 25712725 spots for SRR8907837/SRR8907837.sra
Written 25712725 spots for SRR8907837/SRR8907837.sra

fastq に変換しました。

-rw-r--r-- 1 okishinya so-ddmku 1085017059 Mar 30 14:52 SRR8907837.fastq.gz
Start BMap mapping with following parameters
 species                :R_norvegicus
 revision               :rm6
 seed offset            :0
 seed iterate           :20
 seed step              :5
 min seed hit           :2
 minimum seed length    :20
 maximum seed length    :26
 seed max hit count     :10
 minimum alignment score:150
 output summary file    :SRX5693658.sum.gz
 output alignment file  :SRX5693658.bisulalign

Loading index (FM-index)
    compression factor for suffix array is 2.
    compression factor for counter table is 32.
 -FM-index for c2t genome.... finished (elapsed: 51726 ms)
 -FM-Index for g2a genome.... finished (elapsed: 106292 ms)
 -suffix array for c2t genome.... finished (elapsed: 164281 ms)
 -suffix array for g2a genome.... finished (elapsed: 221346 ms)
 -reference sequence.... finished (elapsed: 226815 ms)
Index loading finished.
File(s) loaded: SRR8907837.fastq.gz.
Time elapsed:1126960 ms
mkdir: cannot create directory ‘/home/okishinya/tmpDirForFastq/SRX5693658’: File exists
=-=-=BMap	OK
-rw-r--r-- 1 okishinya so-ddmku 1379072678 Mar 30 15:12 SRX5693658.bisulalign.gz
-rw-r--r-- 1 okishinya so-ddmku  306085241 Mar 30 15:12 SRX5693658.sum.gz
SRX5693658.sum.gz was set to analysis list.
Analyzing SRX5693658.sum.gz.
=-=-=MapSum	OK
-rw-r--r-- 1 okishinya so-ddmku       4485 Mar 30 15:15 SRX5693658.mapsum.html
Processing "SRX5693658.bisulalign.gz" (1379072678 bytes)
***********************************: finished.
Start exporting ...
Finished.
=-=-=MPTC	OK
-rw-r--r-- 1 okishinya so-ddmku 22961918759 Mar 30 15:18 SRX5693658.graph
=-=-=CalcCoverage	OK
-rw-r--r-- 1 okishinya so-ddmku      555862 Mar 30 15:25 SRX5693658.stat.html
BinSeq                  :/lustre7/home/lustre4/okishinya/chipatlas/bin/Revisions/R_norvegicus/rm6/R_norvegicus_rm6.binseq
GraphFile               :SRX5693658.graph
Output File (methyl)    :SRX5693658.cpg.methyl.bedGraph.gz
Output File (cover)    :SRX5693658.cpg.cover.bedGraph.gz
Output File (tab)    :/dev/null
Output File (methpipe)    :SRX5693658.cpg.methpipe.tab.gz

=-=-=MethExport	OK
-rw-r--r-- 1 okishinya so-ddmku   220618150 Mar 30 15:37 SRX5693658.cpg.cover.bedGraph.gz
-rw-r--r-- 1 okishinya so-ddmku    18435914 Mar 30 15:37 SRX5693658.cpg.methpipe.tab.gz
-rw-r--r-- 1 okishinya so-ddmku   228643889 Mar 30 15:37 SRX5693658.cpg.methyl.bedGraph.gz
=-=-=bmap_sum	OK
=-=-=hypo- hyper-me-region	OK
-rw-r--r-- 1 okishinya so-ddmku    760931 Mar 30 15:43 SRX5693658.hmr
-rw-r--r-- 1 okishinya so-ddmku     10437 Mar 30 15:43 SRX5693658.pmd
-rw-r--r-- 1 okishinya so-ddmku   2831546 Mar 30 15:43 SRX5693658.hypermr
=-=-=BigWig	OK
-rw-r--r-- 1 okishinya so-ddmku 32547062 Mar 30 15:45 SRX5693658.cpg.cover.bw
-rw-r--r-- 1 okishinya so-ddmku 30106617 Mar 30 15:44 SRX5693658.cpg.methyl.bw

=-=-=num_reads	25712724
=-=-=mapping_rate_1	0.816
=-=-=mapping_rate_2	N/A
=-=-=methyl_rate_cpg_total	0.457
=-=-=methyl_rate_cpg_lambda	-
=-=-=low_methyl_region	31782
=-=-=partial_methyl_region	436
=-=-=high_methyl_region	117860
=-=-=coverage	1.04456
=-=-=end	210330_15:45:24
=-=-=duration	.911