Job ID = 12237242
SRX = SRX5693657
Genome = rm6
Started at	210330_14:50:29

sra ファイルのダウンロード中...

Read layout: SINGLE


fastq に変換中...

Read 14990291 spots for SRR8907836/SRR8907836.sra
Written 14990291 spots for SRR8907836/SRR8907836.sra

fastq に変換しました。

-rw-r--r-- 1 okishinya so-ddmku 640014916 Mar 30 14:51 SRR8907836.fastq.gz
Start BMap mapping with following parameters
 species                :R_norvegicus
 revision               :rm6
 seed offset            :0
 seed iterate           :20
 seed step              :5
 min seed hit           :2
 minimum seed length    :20
 maximum seed length    :26
 seed max hit count     :10
 minimum alignment score:150
 output summary file    :SRX5693657.sum.gz
 output alignment file  :SRX5693657.bisulalign

Loading index (FM-index)
    compression factor for suffix array is 2.
    compression factor for counter table is 32.
 -FM-index for c2t genome.... finished (elapsed: 53899 ms)
 -FM-Index for g2a genome.... finished (elapsed: 111409 ms)
 -suffix array for c2t genome.... finished (elapsed: 146907 ms)
 -suffix array for g2a genome.... finished (elapsed: 202126 ms)
 -reference sequence.... finished (elapsed: 208898 ms)
Index loading finished.
File(s) loaded: SRR8907836.fastq.gz.
Time elapsed:742813 ms
mkdir: cannot create directory ‘/home/okishinya/tmpDirForFastq/SRX5693657’: File exists
=-=-=BMap	OK
-rw-r--r-- 1 okishinya so-ddmku 795300466 Mar 30 15:04 SRX5693657.bisulalign.gz
-rw-r--r-- 1 okishinya so-ddmku 177343153 Mar 30 15:04 SRX5693657.sum.gz
SRX5693657.sum.gz was set to analysis list.
Analyzing SRX5693657.sum.gz.
=-=-=MapSum	OK
-rw-r--r-- 1 okishinya so-ddmku      4318 Mar 30 15:06 SRX5693657.mapsum.html
Processing "SRX5693657.bisulalign.gz" (795300466 bytes)
******************************: finished.
Start exporting ...
Finished.
=-=-=MPTC	OK
-rw-r--r-- 1 okishinya so-ddmku 22961918759 Mar 30 15:09 SRX5693657.graph
=-=-=CalcCoverage	OK
-rw-r--r-- 1 okishinya so-ddmku      555647 Mar 30 15:15 SRX5693657.stat.html
BinSeq                  :/lustre7/home/lustre4/okishinya/chipatlas/bin/Revisions/R_norvegicus/rm6/R_norvegicus_rm6.binseq
GraphFile               :SRX5693657.graph
Output File (methyl)    :SRX5693657.cpg.methyl.bedGraph.gz
Output File (cover)    :SRX5693657.cpg.cover.bedGraph.gz
Output File (tab)    :/dev/null
Output File (methpipe)    :SRX5693657.cpg.methpipe.tab.gz

=-=-=MethExport	OK
-rw-r--r-- 1 okishinya so-ddmku   220013780 Mar 30 15:27 SRX5693657.cpg.cover.bedGraph.gz
-rw-r--r-- 1 okishinya so-ddmku    16285291 Mar 30 15:27 SRX5693657.cpg.methpipe.tab.gz
-rw-r--r-- 1 okishinya so-ddmku   226598496 Mar 30 15:27 SRX5693657.cpg.methyl.bedGraph.gz
=-=-=bmap_sum	OK
=-=-=hypo- hyper-me-region	OK
-rw-r--r-- 1 okishinya so-ddmku    612573 Mar 30 15:33 SRX5693657.hmr
-rw-r--r-- 1 okishinya so-ddmku     10618 Mar 30 15:33 SRX5693657.pmd
-rw-r--r-- 1 okishinya so-ddmku   2659148 Mar 30 15:33 SRX5693657.hypermr
=-=-=BigWig	OK
-rw-r--r-- 1 okishinya so-ddmku 30044103 Mar 30 15:35 SRX5693657.cpg.cover.bw
-rw-r--r-- 1 okishinya so-ddmku 20449353 Mar 30 15:34 SRX5693657.cpg.methyl.bw

=-=-=num_reads	14990291
=-=-=mapping_rate_1	0.822
=-=-=mapping_rate_2	N/A
=-=-=methyl_rate_cpg_total	0.464
=-=-=methyl_rate_cpg_lambda	-
=-=-=low_methyl_region	25581
=-=-=partial_methyl_region	444
=-=-=high_methyl_region	110688
=-=-=coverage	0.588958
=-=-=end	210330_15:35:23
=-=-=duration	.748