Job ID = 12237244
SRX = SRX5693655
Genome = rm6
Started at	210330_14:50:29

sra ファイルのダウンロード中...

Read layout: SINGLE


fastq に変換中...

Read 20749563 spots for SRR8907834/SRR8907834.sra
Written 20749563 spots for SRR8907834/SRR8907834.sra

fastq に変換しました。

-rw-r--r-- 1 okishinya so-ddmku 885285896 Mar 30 14:52 SRR8907834.fastq.gz
Start BMap mapping with following parameters
 species                :R_norvegicus
 revision               :rm6
 seed offset            :0
 seed iterate           :20
 seed step              :5
 min seed hit           :2
 minimum seed length    :20
 maximum seed length    :26
 seed max hit count     :10
 minimum alignment score:150
 output summary file    :SRX5693655.sum.gz
 output alignment file  :SRX5693655.bisulalign

Loading index (FM-index)
    compression factor for suffix array is 2.
    compression factor for counter table is 32.
 -FM-index for c2t genome.... finished (elapsed: 52845 ms)
 -FM-Index for g2a genome.... finished (elapsed: 109128 ms)
 -suffix array for c2t genome.... finished (elapsed: 164143 ms)
 -suffix array for g2a genome.... finished (elapsed: 223853 ms)
 -reference sequence.... finished (elapsed: 232855 ms)
Index loading finished.
File(s) loaded: SRR8907834.fastq.gz.
Time elapsed:979633 ms
mkdir: cannot create directory ‘/home/okishinya/tmpDirForFastq/SRX5693655’: File exists
=-=-=BMap	OK
-rw-r--r-- 1 okishinya so-ddmku 1122558452 Mar 30 15:09 SRX5693655.bisulalign.gz
-rw-r--r-- 1 okishinya so-ddmku  247193157 Mar 30 15:09 SRX5693655.sum.gz
SRX5693655.sum.gz was set to analysis list.
Analyzing SRX5693655.sum.gz.
=-=-=MapSum	OK
-rw-r--r-- 1 okishinya so-ddmku       5515 Mar 30 15:11 SRX5693655.mapsum.html
Processing "SRX5693655.bisulalign.gz" (1122558452 bytes)
*****************: finished.
Start exporting ...
Finished.
=-=-=MPTC	OK
-rw-r--r-- 1 okishinya so-ddmku 22961918759 Mar 30 15:14 SRX5693655.graph
=-=-=CalcCoverage	OK
-rw-r--r-- 1 okishinya so-ddmku      555782 Mar 30 15:20 SRX5693655.stat.html
BinSeq                  :/lustre7/home/lustre4/okishinya/chipatlas/bin/Revisions/R_norvegicus/rm6/R_norvegicus_rm6.binseq
GraphFile               :SRX5693655.graph
Output File (methyl)    :SRX5693655.cpg.methyl.bedGraph.gz
Output File (cover)    :SRX5693655.cpg.cover.bedGraph.gz
Output File (tab)    :/dev/null
Output File (methpipe)    :SRX5693655.cpg.methpipe.tab.gz

=-=-=MethExport	OK
-rw-r--r-- 1 okishinya so-ddmku   220358491 Mar 30 15:33 SRX5693655.cpg.cover.bedGraph.gz
-rw-r--r-- 1 okishinya so-ddmku    18166340 Mar 30 15:33 SRX5693655.cpg.methpipe.tab.gz
-rw-r--r-- 1 okishinya so-ddmku   228094059 Mar 30 15:33 SRX5693655.cpg.methyl.bedGraph.gz
=-=-=bmap_sum	OK
=-=-=hypo- hyper-me-region	OK
-rw-r--r-- 1 okishinya so-ddmku    670234 Mar 30 15:39 SRX5693655.hmr
-rw-r--r-- 1 okishinya so-ddmku     11216 Mar 30 15:39 SRX5693655.pmd
-rw-r--r-- 1 okishinya so-ddmku   2872234 Mar 30 15:39 SRX5693655.hypermr
=-=-=BigWig	OK
-rw-r--r-- 1 okishinya so-ddmku 32806976 Mar 30 15:41 SRX5693655.cpg.cover.bw
-rw-r--r-- 1 okishinya so-ddmku 29739378 Mar 30 15:40 SRX5693655.cpg.methyl.bw

=-=-=num_reads	20749556
=-=-=mapping_rate_1	0.819
=-=-=mapping_rate_2	N/A
=-=-=methyl_rate_cpg_total	0.474
=-=-=methyl_rate_cpg_lambda	-
=-=-=low_methyl_region	27999
=-=-=partial_methyl_region	470
=-=-=high_methyl_region	119551
=-=-=coverage	0.785295
=-=-=end	210330_15:41:20
=-=-=duration	.847