Job ID = 12237270
SRX = SRX5693654
Genome = rm6
Started at	210330_14:50:59

sra ファイルのダウンロード中...

Read layout: SINGLE


fastq に変換中...

Read 27852951 spots for SRR8907833/SRR8907833.sra
Written 27852951 spots for SRR8907833/SRR8907833.sra

fastq に変換しました。

-rw-r--r-- 1 okishinya so-ddmku 1181910166 Mar 30 14:52 SRR8907833.fastq.gz
Start BMap mapping with following parameters
 species                :R_norvegicus
 revision               :rm6
 seed offset            :0
 seed iterate           :20
 seed step              :5
 min seed hit           :2
 minimum seed length    :20
 maximum seed length    :26
 seed max hit count     :10
 minimum alignment score:150
 output summary file    :SRX5693654.sum.gz
 output alignment file  :SRX5693654.bisulalign

Loading index (FM-index)
    compression factor for suffix array is 2.
    compression factor for counter table is 32.
 -FM-index for c2t genome.... finished (elapsed: 31848 ms)
 -FM-Index for g2a genome.... finished (elapsed: 67439 ms)
 -suffix array for c2t genome.... finished (elapsed: 113895 ms)
 -suffix array for g2a genome.... finished (elapsed: 173610 ms)
 -reference sequence.... finished (elapsed: 182611 ms)
Index loading finished.
File(s) loaded: SRR8907833.fastq.gz.
Time elapsed:1844444 ms
mkdir: cannot create directory ‘/home/okishinya/tmpDirForFastq/SRX5693654’: File exists
=-=-=BMap	OK
-rw-r--r-- 1 okishinya so-ddmku 1495166708 Mar 30 15:24 SRX5693654.bisulalign.gz
-rw-r--r-- 1 okishinya so-ddmku  329959089 Mar 30 15:24 SRX5693654.sum.gz
SRX5693654.sum.gz was set to analysis list.
Analyzing SRX5693654.sum.gz.
=-=-=MapSum	OK
-rw-r--r-- 1 okishinya so-ddmku       4578 Mar 30 15:27 SRX5693654.mapsum.html
Processing "SRX5693654.bisulalign.gz" (1495166708 bytes)
*************************************************: finished.
Start exporting ...
Finished.
=-=-=MPTC	OK
-rw-r--r-- 1 okishinya so-ddmku 22961918759 Mar 30 15:30 SRX5693654.graph
=-=-=CalcCoverage	OK
-rw-r--r-- 1 okishinya so-ddmku      555934 Mar 30 15:36 SRX5693654.stat.html
BinSeq                  :/lustre7/home/lustre4/okishinya/chipatlas/bin/Revisions/R_norvegicus/rm6/R_norvegicus_rm6.binseq
GraphFile               :SRX5693654.graph
Output File (methyl)    :SRX5693654.cpg.methyl.bedGraph.gz
Output File (cover)    :SRX5693654.cpg.cover.bedGraph.gz
Output File (tab)    :/dev/null
Output File (methpipe)    :SRX5693654.cpg.methpipe.tab.gz

=-=-=MethExport	OK
-rw-r--r-- 1 okishinya so-ddmku   220610137 Mar 30 15:47 SRX5693654.cpg.cover.bedGraph.gz
-rw-r--r-- 1 okishinya so-ddmku    19239019 Mar 30 15:47 SRX5693654.cpg.methpipe.tab.gz
-rw-r--r-- 1 okishinya so-ddmku   229036599 Mar 30 15:47 SRX5693654.cpg.methyl.bedGraph.gz
=-=-=bmap_sum	OK
=-=-=hypo- hyper-me-region	OK
-rw-r--r-- 1 okishinya so-ddmku    718758 Mar 30 15:53 SRX5693654.hmr
-rw-r--r-- 1 okishinya so-ddmku     10302 Mar 30 15:53 SRX5693654.pmd
-rw-r--r-- 1 okishinya so-ddmku   2933789 Mar 30 15:53 SRX5693654.hypermr
=-=-=BigWig	OK
-rw-r--r-- 1 okishinya so-ddmku 33946898 Mar 30 15:55 SRX5693654.cpg.cover.bw
-rw-r--r-- 1 okishinya so-ddmku 31364109 Mar 30 15:54 SRX5693654.cpg.methyl.bw

=-=-=num_reads	27852951
=-=-=mapping_rate_1	0.821
=-=-=mapping_rate_2	N/A
=-=-=methyl_rate_cpg_total	0.468
=-=-=methyl_rate_cpg_lambda	-
=-=-=low_methyl_region	30019
=-=-=partial_methyl_region	431
=-=-=high_methyl_region	122115
=-=-=coverage	1.06042
=-=-=end	210330_15:55:04
=-=-=duration	1.068