Job ID = 12237254
SRX = SRX5693653
Genome = rm6
Started at	210330_14:50:44

sra ファイルのダウンロード中...

Read layout: SINGLE


fastq に変換中...

Read 24241632 spots for SRR8907832/SRR8907832.sra
Written 24241632 spots for SRR8907832/SRR8907832.sra

fastq に変換しました。

-rw-r--r-- 1 okishinya so-ddmku 1030476686 Mar 30 14:52 SRR8907832.fastq.gz
Start BMap mapping with following parameters
 species                :R_norvegicus
 revision               :rm6
 seed offset            :0
 seed iterate           :20
 seed step              :5
 min seed hit           :2
 minimum seed length    :20
 maximum seed length    :26
 seed max hit count     :10
 minimum alignment score:150
 output summary file    :SRX5693653.sum.gz
 output alignment file  :SRX5693653.bisulalign

Loading index (FM-index)
    compression factor for suffix array is 2.
    compression factor for counter table is 32.
 -FM-index for c2t genome.... finished (elapsed: 52877 ms)
 -FM-Index for g2a genome.... finished (elapsed: 108571 ms)
 -suffix array for c2t genome.... finished (elapsed: 170163 ms)
 -suffix array for g2a genome.... finished (elapsed: 227233 ms)
 -reference sequence.... finished (elapsed: 232678 ms)
Index loading finished.
File(s) loaded: SRR8907832.fastq.gz.
Time elapsed:971554 ms
mkdir: cannot create directory ‘/home/okishinya/tmpDirForFastq/SRX5693653’: File exists
=-=-=BMap	OK
-rw-r--r-- 1 okishinya so-ddmku 1311449503 Mar 30 15:09 SRX5693653.bisulalign.gz
-rw-r--r-- 1 okishinya so-ddmku  286222794 Mar 30 15:09 SRX5693653.sum.gz
SRX5693653.sum.gz was set to analysis list.
Analyzing SRX5693653.sum.gz.
=-=-=MapSum	OK
-rw-r--r-- 1 okishinya so-ddmku       4811 Mar 30 15:12 SRX5693653.mapsum.html
Processing "SRX5693653.bisulalign.gz" (1311449503 bytes)
*************************: finished.
Start exporting ...
Finished.
=-=-=MPTC	OK
-rw-r--r-- 1 okishinya so-ddmku 22961918759 Mar 30 15:16 SRX5693653.graph
=-=-=CalcCoverage	OK
-rw-r--r-- 1 okishinya so-ddmku      555871 Mar 30 15:22 SRX5693653.stat.html
BinSeq                  :/lustre7/home/lustre4/okishinya/chipatlas/bin/Revisions/R_norvegicus/rm6/R_norvegicus_rm6.binseq
GraphFile               :SRX5693653.graph
Output File (methyl)    :SRX5693653.cpg.methyl.bedGraph.gz
Output File (cover)    :SRX5693653.cpg.cover.bedGraph.gz
Output File (tab)    :/dev/null
Output File (methpipe)    :SRX5693653.cpg.methpipe.tab.gz

=-=-=MethExport	OK
-rw-r--r-- 1 okishinya so-ddmku   220483888 Mar 30 15:34 SRX5693653.cpg.cover.bedGraph.gz
-rw-r--r-- 1 okishinya so-ddmku    20361386 Mar 30 15:34 SRX5693653.cpg.methpipe.tab.gz
-rw-r--r-- 1 okishinya so-ddmku   228888058 Mar 30 15:34 SRX5693653.cpg.methyl.bedGraph.gz
=-=-=bmap_sum	OK
=-=-=hypo- hyper-me-region	OK
-rw-r--r-- 1 okishinya so-ddmku    560455 Mar 30 15:41 SRX5693653.hmr
-rw-r--r-- 1 okishinya so-ddmku     10705 Mar 30 15:41 SRX5693653.pmd
-rw-r--r-- 1 okishinya so-ddmku   3275711 Mar 30 15:41 SRX5693653.hypermr
=-=-=BigWig	OK
-rw-r--r-- 1 okishinya so-ddmku  37181212 Mar 30 15:43 SRX5693653.cpg.cover.bw
-rw-r--r-- 1 okishinya so-ddmku  25627130 Mar 30 15:42 SRX5693653.cpg.methyl.bw

=-=-=num_reads	24241630
=-=-=mapping_rate_1	0.817
=-=-=mapping_rate_2	N/A
=-=-=methyl_rate_cpg_total	0.483
=-=-=methyl_rate_cpg_lambda	-
=-=-=low_methyl_region	23405
=-=-=partial_methyl_region	448
=-=-=high_methyl_region	136396
=-=-=coverage	0.862237
=-=-=end	210330_15:43:35
=-=-=duration	.880