Job ID = 12237243
SRX = SRX5693652
Genome = rm6
Started at	210330_14:50:29

sra ファイルのダウンロード中...

Read layout: SINGLE


fastq に変換中...

Read 17135032 spots for SRR8907831/SRR8907831.sra
Written 17135032 spots for SRR8907831/SRR8907831.sra

fastq に変換しました。

-rw-r--r-- 1 okishinya so-ddmku 731324813 Mar 30 14:51 SRR8907831.fastq.gz
Start BMap mapping with following parameters
 species                :R_norvegicus
 revision               :rm6
 seed offset            :0
 seed iterate           :20
 seed step              :5
 min seed hit           :2
 minimum seed length    :20
 maximum seed length    :26
 seed max hit count     :10
 minimum alignment score:150
 output summary file    :SRX5693652.sum.gz
 output alignment file  :SRX5693652.bisulalign

Loading index (FM-index)
    compression factor for suffix array is 2.
    compression factor for counter table is 32.
 -FM-index for c2t genome.... finished (elapsed: 52948 ms)
 -FM-Index for g2a genome.... finished (elapsed: 108641 ms)
 -suffix array for c2t genome.... finished (elapsed: 135436 ms)
 -suffix array for g2a genome.... finished (elapsed: 190649 ms)
 -reference sequence.... finished (elapsed: 197427 ms)
Index loading finished.
File(s) loaded: SRR8907831.fastq.gz.
Time elapsed:730872 ms
mkdir: cannot create directory ‘/home/okishinya/tmpDirForFastq/SRX5693652’: File exists
=-=-=BMap	OK
-rw-r--r-- 1 okishinya so-ddmku 933850619 Mar 30 15:04 SRX5693652.bisulalign.gz
-rw-r--r-- 1 okishinya so-ddmku 203997092 Mar 30 15:04 SRX5693652.sum.gz
SRX5693652.sum.gz was set to analysis list.
Analyzing SRX5693652.sum.gz.
=-=-=MapSum	OK
-rw-r--r-- 1 okishinya so-ddmku      4488 Mar 30 15:06 SRX5693652.mapsum.html
Processing "SRX5693652.bisulalign.gz" (933850619 bytes)
***************************************: finished.
Start exporting ...
Finished.
=-=-=MPTC	OK
-rw-r--r-- 1 okishinya so-ddmku 22961918759 Mar 30 15:09 SRX5693652.graph
=-=-=CalcCoverage	OK
-rw-r--r-- 1 okishinya so-ddmku      555664 Mar 30 15:15 SRX5693652.stat.html
BinSeq                  :/lustre7/home/lustre4/okishinya/chipatlas/bin/Revisions/R_norvegicus/rm6/R_norvegicus_rm6.binseq
GraphFile               :SRX5693652.graph
Output File (methyl)    :SRX5693652.cpg.methyl.bedGraph.gz
Output File (cover)    :SRX5693652.cpg.cover.bedGraph.gz
Output File (tab)    :/dev/null
Output File (methpipe)    :SRX5693652.cpg.methpipe.tab.gz

=-=-=MethExport	OK
-rw-r--r-- 1 okishinya so-ddmku   220184596 Mar 30 15:27 SRX5693652.cpg.cover.bedGraph.gz
-rw-r--r-- 1 okishinya so-ddmku    17023167 Mar 30 15:27 SRX5693652.cpg.methpipe.tab.gz
-rw-r--r-- 1 okishinya so-ddmku   227401725 Mar 30 15:27 SRX5693652.cpg.methyl.bedGraph.gz
=-=-=bmap_sum	OK
=-=-=hypo- hyper-me-region	OK
-rw-r--r-- 1 okishinya so-ddmku    663502 Mar 30 15:33 SRX5693652.hmr
-rw-r--r-- 1 okishinya so-ddmku     11207 Mar 30 15:33 SRX5693652.pmd
-rw-r--r-- 1 okishinya so-ddmku   2777984 Mar 30 15:33 SRX5693652.hypermr
=-=-=BigWig	OK
-rw-r--r-- 1 okishinya so-ddmku 31193950 Mar 30 15:35 SRX5693652.cpg.cover.bw
-rw-r--r-- 1 okishinya so-ddmku 28154605 Mar 30 15:34 SRX5693652.cpg.methyl.bw

=-=-=num_reads	17135031
=-=-=mapping_rate_1	0.823
=-=-=mapping_rate_2	N/A
=-=-=methyl_rate_cpg_total	0.475
=-=-=methyl_rate_cpg_lambda	-
=-=-=low_methyl_region	27712
=-=-=partial_methyl_region	469
=-=-=high_methyl_region	115639
=-=-=coverage	0.650943
=-=-=end	210330_15:35:49
=-=-=duration	.755