Job ID = 12237250
SRX = SRX5693651
Genome = rm6
Started at	210330_14:51:20

sra ファイルのダウンロード中...

Read layout: SINGLE


fastq に変換中...

Read 23394623 spots for SRR8907830/SRR8907830.sra
Written 23394623 spots for SRR8907830/SRR8907830.sra

fastq に変換しました。

-rw-r--r-- 1 okishinya so-ddmku 1024080167 Mar 30 14:52 SRR8907830.fastq.gz
Start BMap mapping with following parameters
 species                :R_norvegicus
 revision               :rm6
 seed offset            :0
 seed iterate           :20
 seed step              :5
 min seed hit           :2
 minimum seed length    :20
 maximum seed length    :26
 seed max hit count     :10
 minimum alignment score:150
 output summary file    :SRX5693651.sum.gz
 output alignment file  :SRX5693651.bisulalign

Loading index (FM-index)
    compression factor for suffix array is 2.
    compression factor for counter table is 32.
 -FM-index for c2t genome.... finished (elapsed: 54228 ms)
 -FM-Index for g2a genome.... finished (elapsed: 110989 ms)
 -suffix array for c2t genome.... finished (elapsed: 146576 ms)
 -suffix array for g2a genome.... finished (elapsed: 203663 ms)
 -reference sequence.... finished (elapsed: 209091 ms)
Index loading finished.
File(s) loaded: SRR8907830.fastq.gz.
Time elapsed:1418333 ms
mkdir: cannot create directory ‘/home/okishinya/tmpDirForFastq/SRX5693651’: File exists
=-=-=BMap	OK
-rw-r--r-- 1 okishinya so-ddmku 1313144560 Mar 30 15:17 SRX5693651.bisulalign.gz
-rw-r--r-- 1 okishinya so-ddmku  270894687 Mar 30 15:17 SRX5693651.sum.gz
SRX5693651.sum.gz was set to analysis list.
Analyzing SRX5693651.sum.gz.
=-=-=MapSum	OK
-rw-r--r-- 1 okishinya so-ddmku       4733 Mar 30 15:20 SRX5693651.mapsum.html
Processing "SRX5693651.bisulalign.gz" (1313144560 bytes)
**: finished.
Start exporting ...
Finished.
=-=-=MPTC	OK
-rw-r--r-- 1 okishinya so-ddmku 22961918759 Mar 30 15:24 SRX5693651.graph
=-=-=CalcCoverage	OK
-rw-r--r-- 1 okishinya so-ddmku      555805 Mar 30 15:30 SRX5693651.stat.html
BinSeq                  :/lustre7/home/lustre4/okishinya/chipatlas/bin/Revisions/R_norvegicus/rm6/R_norvegicus_rm6.binseq
GraphFile               :SRX5693651.graph
Output File (methyl)    :SRX5693651.cpg.methyl.bedGraph.gz
Output File (cover)    :SRX5693651.cpg.cover.bedGraph.gz
Output File (tab)    :/dev/null
Output File (methpipe)    :SRX5693651.cpg.methpipe.tab.gz

=-=-=MethExport	OK
-rw-r--r-- 1 okishinya so-ddmku   220508360 Mar 30 15:42 SRX5693651.cpg.cover.bedGraph.gz
-rw-r--r-- 1 okishinya so-ddmku    17801914 Mar 30 15:42 SRX5693651.cpg.methpipe.tab.gz
-rw-r--r-- 1 okishinya so-ddmku   228318879 Mar 30 15:42 SRX5693651.cpg.methyl.bedGraph.gz
=-=-=bmap_sum	OK
=-=-=hypo- hyper-me-region	OK
-rw-r--r-- 1 okishinya so-ddmku    650257 Mar 30 15:48 SRX5693651.hmr
-rw-r--r-- 1 okishinya so-ddmku     12110 Mar 30 15:48 SRX5693651.pmd
-rw-r--r-- 1 okishinya so-ddmku   2565991 Mar 30 15:48 SRX5693651.hypermr
=-=-=BigWig	OK
-rw-r--r-- 1 okishinya so-ddmku 31629333 Mar 30 15:50 SRX5693651.cpg.cover.bw
-rw-r--r-- 1 okishinya so-ddmku 28929235 Mar 30 15:49 SRX5693651.cpg.methyl.bw

=-=-=num_reads	23394621
=-=-=mapping_rate_1	0.833
=-=-=mapping_rate_2	N/A
=-=-=methyl_rate_cpg_total	0.404
=-=-=methyl_rate_cpg_lambda	-
=-=-=low_methyl_region	27155
=-=-=partial_methyl_region	506
=-=-=high_methyl_region	106830
=-=-=coverage	0.978275
=-=-=end	210330_15:50:27
=-=-=duration	.985