Job ID = 12237263
SRX = SRX5693650
Genome = rm6
Started at	210330_14:50:44

sra ファイルのダウンロード中...

Read layout: SINGLE


fastq に変換中...

Read 25559679 spots for SRR8907829/SRR8907829.sra
Written 25559679 spots for SRR8907829/SRR8907829.sra

fastq に変換しました。

-rw-r--r-- 1 okishinya so-ddmku 1120088270 Mar 30 14:52 SRR8907829.fastq.gz
Start BMap mapping with following parameters
 species                :R_norvegicus
 revision               :rm6
 seed offset            :0
 seed iterate           :20
 seed step              :5
 min seed hit           :2
 minimum seed length    :20
 maximum seed length    :26
 seed max hit count     :10
 minimum alignment score:150
 output summary file    :SRX5693650.sum.gz
 output alignment file  :SRX5693650.bisulalign

Loading index (FM-index)
    compression factor for suffix array is 2.
    compression factor for counter table is 32.
 -FM-index for c2t genome.... finished (elapsed: 51803 ms)
 -FM-Index for g2a genome.... finished (elapsed: 106534 ms)
 -suffix array for c2t genome.... finished (elapsed: 165194 ms)
 -suffix array for g2a genome.... finished (elapsed: 222259 ms)
 -reference sequence.... finished (elapsed: 227728 ms)
Index loading finished.
File(s) loaded: SRR8907829.fastq.gz.
Time elapsed:1058333 ms
mkdir: cannot create directory ‘/home/okishinya/tmpDirForFastq/SRX5693650’: File exists
=-=-=BMap	OK
-rw-r--r-- 1 okishinya so-ddmku 1428953230 Mar 30 15:11 SRX5693650.bisulalign.gz
-rw-r--r-- 1 okishinya so-ddmku  296906555 Mar 30 15:11 SRX5693650.sum.gz
SRX5693650.sum.gz was set to analysis list.
Analyzing SRX5693650.sum.gz.
=-=-=MapSum	OK
-rw-r--r-- 1 okishinya so-ddmku       4561 Mar 30 15:13 SRX5693650.mapsum.html
Processing "SRX5693650.bisulalign.gz" (1428953230 bytes)
***************************: finished.
Start exporting ...
Finished.
=-=-=MPTC	OK
-rw-r--r-- 1 okishinya so-ddmku 22961918759 Mar 30 15:17 SRX5693650.graph
=-=-=CalcCoverage	OK
-rw-r--r-- 1 okishinya so-ddmku      555712 Mar 30 15:23 SRX5693650.stat.html
BinSeq                  :/lustre7/home/lustre4/okishinya/chipatlas/bin/Revisions/R_norvegicus/rm6/R_norvegicus_rm6.binseq
GraphFile               :SRX5693650.graph
Output File (methyl)    :SRX5693650.cpg.methyl.bedGraph.gz
Output File (cover)    :SRX5693650.cpg.cover.bedGraph.gz
Output File (tab)    :/dev/null
Output File (methpipe)    :SRX5693650.cpg.methpipe.tab.gz

=-=-=MethExport	OK
-rw-r--r-- 1 okishinya so-ddmku   220611208 Mar 30 15:35 SRX5693650.cpg.cover.bedGraph.gz
-rw-r--r-- 1 okishinya so-ddmku    17941725 Mar 30 15:35 SRX5693650.cpg.methpipe.tab.gz
-rw-r--r-- 1 okishinya so-ddmku   228614577 Mar 30 15:35 SRX5693650.cpg.methyl.bedGraph.gz
=-=-=bmap_sum	OK
=-=-=hypo- hyper-me-region	OK
-rw-r--r-- 1 okishinya so-ddmku    687739 Mar 30 15:41 SRX5693650.hmr
-rw-r--r-- 1 okishinya so-ddmku     11573 Mar 30 15:41 SRX5693650.pmd
-rw-r--r-- 1 okishinya so-ddmku   2526399 Mar 30 15:41 SRX5693650.hypermr
=-=-=BigWig	OK
-rw-r--r-- 1 okishinya so-ddmku 31564880 Mar 30 15:43 SRX5693650.cpg.cover.bw
-rw-r--r-- 1 okishinya so-ddmku 29136121 Mar 30 15:42 SRX5693650.cpg.methyl.bw

=-=-=num_reads	25559678
=-=-=mapping_rate_1	0.83
=-=-=mapping_rate_2	N/A
=-=-=methyl_rate_cpg_total	0.404
=-=-=methyl_rate_cpg_lambda	-
=-=-=low_methyl_region	28721
=-=-=partial_methyl_region	483
=-=-=high_methyl_region	105505
=-=-=coverage	1.09987
=-=-=end	210330_15:43:26
=-=-=duration	.878