Job ID = 12237304
SRX = SRX5693649
Genome = rm6
Started at	210330_14:51:14

sra ファイルのダウンロード中...

Read layout: SINGLE


fastq に変換中...

Read 37561432 spots for SRR8907828/SRR8907828.sra
Written 37561432 spots for SRR8907828/SRR8907828.sra

fastq に変換しました。

-rw-r--r-- 1 okishinya so-ddmku 1647080398 Mar 30 14:54 SRR8907828.fastq.gz
Start BMap mapping with following parameters
 species                :R_norvegicus
 revision               :rm6
 seed offset            :0
 seed iterate           :20
 seed step              :5
 min seed hit           :2
 minimum seed length    :20
 maximum seed length    :26
 seed max hit count     :10
 minimum alignment score:150
 output summary file    :SRX5693649.sum.gz
 output alignment file  :SRX5693649.bisulalign

Loading index (FM-index)
    compression factor for suffix array is 2.
    compression factor for counter table is 32.
 -FM-index for c2t genome.... finished (elapsed: 35088 ms)
 -FM-Index for g2a genome.... finished (elapsed: 70202 ms)
 -suffix array for c2t genome.... finished (elapsed: 88874 ms)
 -suffix array for g2a genome.... finished (elapsed: 137238 ms)
 -reference sequence.... finished (elapsed: 138481 ms)
Index loading finished.
File(s) loaded: SRR8907828.fastq.gz.
Time elapsed:1708382 ms
mkdir: cannot create directory ‘/home/okishinya/tmpDirForFastq/SRX5693649’: File exists
=-=-=BMap	OK
-rw-r--r-- 1 okishinya so-ddmku 2113430550 Mar 30 15:24 SRX5693649.bisulalign.gz
-rw-r--r-- 1 okishinya so-ddmku  436000999 Mar 30 15:24 SRX5693649.sum.gz
SRX5693649.sum.gz was set to analysis list.
Analyzing SRX5693649.sum.gz.
=-=-=MapSum	OK
-rw-r--r-- 1 okishinya so-ddmku       4324 Mar 30 15:28 SRX5693649.mapsum.html
Processing "SRX5693649.bisulalign.gz" (2113430550 bytes)
*******************************: finished.
Start exporting ...
Finished.
=-=-=MPTC	OK
-rw-r--r-- 1 okishinya so-ddmku 22961918759 Mar 30 15:33 SRX5693649.graph
=-=-=CalcCoverage	OK
-rw-r--r-- 1 okishinya so-ddmku      557894 Mar 30 15:40 SRX5693649.stat.html
BinSeq                  :/lustre7/home/lustre4/okishinya/chipatlas/bin/Revisions/R_norvegicus/rm6/R_norvegicus_rm6.binseq
GraphFile               :SRX5693649.graph
Output File (methyl)    :SRX5693649.cpg.methyl.bedGraph.gz
Output File (cover)    :SRX5693649.cpg.cover.bedGraph.gz
Output File (tab)    :/dev/null
Output File (methpipe)    :SRX5693649.cpg.methpipe.tab.gz

=-=-=MethExport	OK
-rw-r--r-- 1 okishinya so-ddmku   220845424 Mar 30 15:55 SRX5693649.cpg.cover.bedGraph.gz
-rw-r--r-- 1 okishinya so-ddmku    19853410 Mar 30 15:55 SRX5693649.cpg.methpipe.tab.gz
-rw-r--r-- 1 okishinya so-ddmku   229811500 Mar 30 15:55 SRX5693649.cpg.methyl.bedGraph.gz
=-=-=bmap_sum	OK
=-=-=hypo- hyper-me-region	OK
-rw-r--r-- 1 okishinya so-ddmku    697281 Mar 30 16:02 SRX5693649.hmr
-rw-r--r-- 1 okishinya so-ddmku     12498 Mar 30 16:02 SRX5693649.pmd
-rw-r--r-- 1 okishinya so-ddmku   2724768 Mar 30 16:02 SRX5693649.hypermr
=-=-=BigWig	OK
-rw-r--r-- 1 okishinya so-ddmku 34213306 Mar 30 16:05 SRX5693649.cpg.cover.bw
-rw-r--r-- 1 okishinya so-ddmku 31980071 Mar 30 16:03 SRX5693649.cpg.methyl.bw

=-=-=num_reads	37561432
=-=-=mapping_rate_1	0.835
=-=-=mapping_rate_2	N/A
=-=-=methyl_rate_cpg_total	0.413
=-=-=methyl_rate_cpg_lambda	-
=-=-=low_methyl_region	29123
=-=-=partial_methyl_region	522
=-=-=high_methyl_region	113424
=-=-=coverage	1.59282
=-=-=end	210330_16:05:03
=-=-=duration	1.230