Job ID = 12237261
SRX = SRX5693648
Genome = rm6
Started at	210330_14:50:44

sra ファイルのダウンロード中...

Read layout: SINGLE


fastq に変換中...

Read 25062167 spots for SRR8907827/SRR8907827.sra
Written 25062167 spots for SRR8907827/SRR8907827.sra

fastq に変換しました。

-rw-r--r-- 1 okishinya so-ddmku 1075452073 Mar 30 14:52 SRR8907827.fastq.gz
Start BMap mapping with following parameters
 species                :R_norvegicus
 revision               :rm6
 seed offset            :0
 seed iterate           :20
 seed step              :5
 min seed hit           :2
 minimum seed length    :20
 maximum seed length    :26
 seed max hit count     :10
 minimum alignment score:150
 output summary file    :SRX5693648.sum.gz
 output alignment file  :SRX5693648.bisulalign

Loading index (FM-index)
    compression factor for suffix array is 2.
    compression factor for counter table is 32.
 -FM-index for c2t genome.... finished (elapsed: 52713 ms)
 -FM-Index for g2a genome.... finished (elapsed: 108283 ms)
 -suffix array for c2t genome.... finished (elapsed: 168512 ms)
 -suffix array for g2a genome.... finished (elapsed: 225577 ms)
 -reference sequence.... finished (elapsed: 231046 ms)
Index loading finished.
File(s) loaded: SRR8907827.fastq.gz.
Time elapsed:1011217 ms
mkdir: cannot create directory ‘/home/okishinya/tmpDirForFastq/SRX5693648’: File exists
=-=-=BMap	OK
-rw-r--r-- 1 okishinya so-ddmku 1337812929 Mar 30 15:10 SRX5693648.bisulalign.gz
-rw-r--r-- 1 okishinya so-ddmku  299392697 Mar 30 15:10 SRX5693648.sum.gz
SRX5693648.sum.gz was set to analysis list.
Analyzing SRX5693648.sum.gz.
=-=-=MapSum	OK
-rw-r--r-- 1 okishinya so-ddmku       4896 Mar 30 15:13 SRX5693648.mapsum.html
Processing "SRX5693648.bisulalign.gz" (1337812929 bytes)
**********: finished.
Start exporting ...
Finished.
=-=-=MPTC	OK
-rw-r--r-- 1 okishinya so-ddmku 22961918759 Mar 30 15:16 SRX5693648.graph
=-=-=CalcCoverage	OK
-rw-r--r-- 1 okishinya so-ddmku      555759 Mar 30 15:22 SRX5693648.stat.html
BinSeq                  :/lustre7/home/lustre4/okishinya/chipatlas/bin/Revisions/R_norvegicus/rm6/R_norvegicus_rm6.binseq
GraphFile               :SRX5693648.graph
Output File (methyl)    :SRX5693648.cpg.methyl.bedGraph.gz
Output File (cover)    :SRX5693648.cpg.cover.bedGraph.gz
Output File (tab)    :/dev/null
Output File (methpipe)    :SRX5693648.cpg.methpipe.tab.gz

=-=-=MethExport	OK
-rw-r--r-- 1 okishinya so-ddmku   220533572 Mar 30 15:34 SRX5693648.cpg.cover.bedGraph.gz
-rw-r--r-- 1 okishinya so-ddmku    17361410 Mar 30 15:34 SRX5693648.cpg.methpipe.tab.gz
-rw-r--r-- 1 okishinya so-ddmku   228080637 Mar 30 15:34 SRX5693648.cpg.methyl.bedGraph.gz
=-=-=bmap_sum	OK
=-=-=hypo- hyper-me-region	OK
-rw-r--r-- 1 okishinya so-ddmku    779255 Mar 30 15:40 SRX5693648.hmr
-rw-r--r-- 1 okishinya so-ddmku     11951 Mar 30 15:40 SRX5693648.pmd
-rw-r--r-- 1 okishinya so-ddmku   2620644 Mar 30 15:40 SRX5693648.hypermr
=-=-=BigWig	OK
-rw-r--r-- 1 okishinya so-ddmku 30475417 Mar 30 15:42 SRX5693648.cpg.cover.bw
-rw-r--r-- 1 okishinya so-ddmku 27862915 Mar 30 15:41 SRX5693648.cpg.methyl.bw

=-=-=num_reads	25062165
=-=-=mapping_rate_1	0.82
=-=-=mapping_rate_2	N/A
=-=-=methyl_rate_cpg_total	0.419
=-=-=methyl_rate_cpg_lambda	0.127
=-=-=low_methyl_region	32545
=-=-=partial_methyl_region	500
=-=-=high_methyl_region	109049
=-=-=coverage	1.09928
=-=-=end	210330_15:42:12
=-=-=duration	.857