Job ID = 12237306
SRX = SRX5693647
Genome = rm6
Started at	210330_14:51:14

sra ファイルのダウンロード中...

Read layout: SINGLE


fastq に変換中...

Read 40972629 spots for SRR8907826/SRR8907826.sra
Written 40972629 spots for SRR8907826/SRR8907826.sra

fastq に変換しました。

-rw-r--r-- 1 okishinya so-ddmku 1791251611 Mar 30 14:54 SRR8907826.fastq.gz
Start BMap mapping with following parameters
 species                :R_norvegicus
 revision               :rm6
 seed offset            :0
 seed iterate           :20
 seed step              :5
 min seed hit           :2
 minimum seed length    :20
 maximum seed length    :26
 seed max hit count     :10
 minimum alignment score:150
 output summary file    :SRX5693647.sum.gz
 output alignment file  :SRX5693647.bisulalign

Loading index (FM-index)
    compression factor for suffix array is 2.
    compression factor for counter table is 32.
 -FM-index for c2t genome.... finished (elapsed: 35762 ms)
 -FM-Index for g2a genome.... finished (elapsed: 71684 ms)
 -suffix array for c2t genome.... finished (elapsed: 102525 ms)
 -suffix array for g2a genome.... finished (elapsed: 151286 ms)
 -reference sequence.... finished (elapsed: 152133 ms)
Index loading finished.
File(s) loaded: SRR8907826.fastq.gz.
Time elapsed:1991647 ms
mkdir: cannot create directory ‘/home/okishinya/tmpDirForFastq/SRX5693647’: File exists
=-=-=BMap	OK
-rw-r--r-- 1 okishinya so-ddmku 2239074496 Mar 30 15:29 SRX5693647.bisulalign.gz
-rw-r--r-- 1 okishinya so-ddmku  471282984 Mar 30 15:29 SRX5693647.sum.gz
SRX5693647.sum.gz was set to analysis list.
Analyzing SRX5693647.sum.gz.
=-=-=MapSum	OK
-rw-r--r-- 1 okishinya so-ddmku       4238 Mar 30 15:34 SRX5693647.mapsum.html
Processing "SRX5693647.bisulalign.gz" (2239074496 bytes)
********: finished.
Start exporting ...
Finished.
=-=-=MPTC	OK
-rw-r--r-- 1 okishinya so-ddmku 22961918759 Mar 30 15:39 SRX5693647.graph
=-=-=CalcCoverage	OK
-rw-r--r-- 1 okishinya so-ddmku      557863 Mar 30 15:46 SRX5693647.stat.html
BinSeq                  :/lustre7/home/lustre4/okishinya/chipatlas/bin/Revisions/R_norvegicus/rm6/R_norvegicus_rm6.binseq
GraphFile               :SRX5693647.graph
Output File (methyl)    :SRX5693647.cpg.methyl.bedGraph.gz
Output File (cover)    :SRX5693647.cpg.cover.bedGraph.gz
Output File (tab)    :/dev/null
Output File (methpipe)    :SRX5693647.cpg.methpipe.tab.gz

=-=-=MethExport	OK
-rw-r--r-- 1 okishinya so-ddmku   220865425 Mar 30 16:00 SRX5693647.cpg.cover.bedGraph.gz
-rw-r--r-- 1 okishinya so-ddmku    19866544 Mar 30 16:00 SRX5693647.cpg.methpipe.tab.gz
-rw-r--r-- 1 okishinya so-ddmku   230037620 Mar 30 16:00 SRX5693647.cpg.methyl.bedGraph.gz
=-=-=bmap_sum	OK
=-=-=hypo- hyper-me-region	OK
-rw-r--r-- 1 okishinya so-ddmku    711098 Mar 30 16:07 SRX5693647.hmr
-rw-r--r-- 1 okishinya so-ddmku     13114 Mar 30 16:07 SRX5693647.pmd
-rw-r--r-- 1 okishinya so-ddmku   2622247 Mar 30 16:07 SRX5693647.hypermr
=-=-=BigWig	OK
-rw-r--r-- 1 okishinya so-ddmku 33625623 Mar 30 16:10 SRX5693647.cpg.cover.bw
-rw-r--r-- 1 okishinya so-ddmku 31774051 Mar 30 16:09 SRX5693647.cpg.methyl.bw

=-=-=num_reads	40972629
=-=-=mapping_rate_1	0.826
=-=-=mapping_rate_2	N/A
=-=-=methyl_rate_cpg_total	0.407
=-=-=methyl_rate_cpg_lambda	-
=-=-=low_methyl_region	29703
=-=-=partial_methyl_region	548
=-=-=high_methyl_region	109462
=-=-=coverage	1.77197
=-=-=end	210330_16:10:18
=-=-=duration	1.317