Job ID = 12237265
SRX = SRX5693646
Genome = rm6
Started at	210330_14:50:44

sra ファイルのダウンロード中...

Read layout: SINGLE


fastq に変換中...

Read 26695840 spots for SRR8907825/SRR8907825.sra
Written 26695840 spots for SRR8907825/SRR8907825.sra

fastq に変換しました。

-rw-r--r-- 1 okishinya so-ddmku 1177751263 Mar 30 14:52 SRR8907825.fastq.gz
Start BMap mapping with following parameters
 species                :R_norvegicus
 revision               :rm6
 seed offset            :0
 seed iterate           :20
 seed step              :5
 min seed hit           :2
 minimum seed length    :20
 maximum seed length    :26
 seed max hit count     :10
 minimum alignment score:150
 output summary file    :SRX5693646.sum.gz
 output alignment file  :SRX5693646.bisulalign

Loading index (FM-index)
    compression factor for suffix array is 2.
    compression factor for counter table is 32.
 -FM-index for c2t genome.... finished (elapsed: 53096 ms)
 -FM-Index for g2a genome.... finished (elapsed: 109314 ms)
 -suffix array for c2t genome.... finished (elapsed: 151534 ms)
 -suffix array for g2a genome.... finished (elapsed: 208603 ms)
 -reference sequence.... finished (elapsed: 214048 ms)
Index loading finished.
File(s) loaded: SRR8907825.fastq.gz.
Time elapsed:1055690 ms
mkdir: cannot create directory ‘/home/okishinya/tmpDirForFastq/SRX5693646’: File exists
=-=-=BMap	OK
-rw-r--r-- 1 okishinya so-ddmku 1448031525 Mar 30 15:11 SRX5693646.bisulalign.gz
-rw-r--r-- 1 okishinya so-ddmku  306623397 Mar 30 15:11 SRX5693646.sum.gz
SRX5693646.sum.gz was set to analysis list.
Analyzing SRX5693646.sum.gz.
=-=-=MapSum	OK
-rw-r--r-- 1 okishinya so-ddmku       4485 Mar 30 15:14 SRX5693646.mapsum.html
Processing "SRX5693646.bisulalign.gz" (1448031525 bytes)
************************************: finished.
Start exporting ...
Finished.
=-=-=MPTC	OK
-rw-r--r-- 1 okishinya so-ddmku 22961918759 Mar 30 15:17 SRX5693646.graph
=-=-=CalcCoverage	OK
-rw-r--r-- 1 okishinya so-ddmku      555772 Mar 30 15:23 SRX5693646.stat.html
BinSeq                  :/lustre7/home/lustre4/okishinya/chipatlas/bin/Revisions/R_norvegicus/rm6/R_norvegicus_rm6.binseq
GraphFile               :SRX5693646.graph
Output File (methyl)    :SRX5693646.cpg.methyl.bedGraph.gz
Output File (cover)    :SRX5693646.cpg.cover.bedGraph.gz
Output File (tab)    :/dev/null
Output File (methpipe)    :SRX5693646.cpg.methpipe.tab.gz

=-=-=MethExport	OK
-rw-r--r-- 1 okishinya so-ddmku   220572198 Mar 30 15:36 SRX5693646.cpg.cover.bedGraph.gz
-rw-r--r-- 1 okishinya so-ddmku    17700554 Mar 30 15:36 SRX5693646.cpg.methpipe.tab.gz
-rw-r--r-- 1 okishinya so-ddmku   228357348 Mar 30 15:36 SRX5693646.cpg.methyl.bedGraph.gz
=-=-=bmap_sum	OK
=-=-=hypo- hyper-me-region	OK
-rw-r--r-- 1 okishinya so-ddmku    707678 Mar 30 15:42 SRX5693646.hmr
-rw-r--r-- 1 okishinya so-ddmku     11164 Mar 30 15:42 SRX5693646.pmd
-rw-r--r-- 1 okishinya so-ddmku   2468875 Mar 30 15:42 SRX5693646.hypermr
=-=-=BigWig	OK
-rw-r--r-- 1 okishinya so-ddmku 30933921 Mar 30 15:43 SRX5693646.cpg.cover.bw
-rw-r--r-- 1 okishinya so-ddmku 28336967 Mar 30 15:43 SRX5693646.cpg.methyl.bw

=-=-=num_reads	26695837
=-=-=mapping_rate_1	0.824
=-=-=mapping_rate_2	N/A
=-=-=methyl_rate_cpg_total	0.397
=-=-=methyl_rate_cpg_lambda	-
=-=-=low_methyl_region	29557
=-=-=partial_methyl_region	467
=-=-=high_methyl_region	102740
=-=-=coverage	1.15888
=-=-=end	210330_15:43:59
=-=-=duration	.887