Job ID = 12237432
SRX = SRX4725060
Genome = rm6
Started at	210330_17:14:02

sra ファイルのダウンロード中...

Read layout: PAIRED


fastq に変換中...

Read 436880831 spots for SRR7887409/SRR7887409.sra
Written 436880831 spots for SRR7887409/SRR7887409.sra

fastq に変換しました。

-rw-r--r-- 1 okishinya so-ddmku 32201646293 Mar 30 18:13 SRR7887409_1.fastq.gz
-rw-r--r-- 1 okishinya so-ddmku 35613017715 Mar 30 18:13 SRR7887409_2.fastq.gz
Start BMap mapping with following parameters
 species                :R_norvegicus
 revision               :rm6
 seed offset            :0
 seed iterate           :20
 seed step              :5
 min seed hit           :2
 minimum seed length    :20
 maximum seed length    :26
 seed max hit count     :10
 minimum alignment score:150
 output summary file    :SRX4725060.sum.gz
 output alignment file  :SRX4725060.bisulalign

Loading index (FM-index)
    compression factor for suffix array is 2.
    compression factor for counter table is 32.
 -FM-index for c2t genome.... finished (elapsed: 56040 ms)
 -FM-Index for g2a genome.... finished (elapsed: 113006 ms)
 -suffix array for c2t genome.... finished (elapsed: 122989 ms)
 -suffix array for g2a genome.... finished (elapsed: 132738 ms)
 -reference sequence.... finished (elapsed: 133123 ms)
Index loading finished.
File(s) loaded: SRR7887409_1.fastq.gz, SRR7887409_2.fastq.gz.
Time elapsed:51448294 ms
=-=-=BMap	OK
-rw-r--r-- 1 okishinya so-ddmku 64940247630 Mar 31 09:48 SRX4725060.bisulalign.gz
-rw-r--r-- 1 okishinya so-ddmku  8729463457 Mar 31 09:48 SRX4725060.sum.gz
SRX4725060.sum.gz was set to analysis list.
Analyzing SRX4725060.sum.gz.
=-=-=MapSum	OK
-rw-r--r-- 1 okishinya so-ddmku        5913 Mar 31 11:35 SRX4725060.mapsum.html
Processing "SRX4725060.bisulalign.gz" (64940247630 bytes)
**************************************: finished.
Start exporting ...
Finished.
=-=-=MPTC	OK
-rw-r--r-- 1 okishinya so-ddmku 22961918759 Mar 31 12:05 SRX4725060.graph
=-=-=CalcCoverage	OK
-rw-r--r-- 1 okishinya so-ddmku      582678 Mar 31 12:16 SRX4725060.stat.html
BinSeq                  :/lustre7/home/lustre4/okishinya/chipatlas/bin/Revisions/R_norvegicus/rm6/R_norvegicus_rm6.binseq
GraphFile               :SRX4725060.graph
Output File (methyl)    :SRX4725060.cpg.methyl.bedGraph.gz
Output File (cover)    :SRX4725060.cpg.cover.bedGraph.gz
Output File (tab)    :/dev/null
Output File (methpipe)    :SRX4725060.cpg.methpipe.tab.gz

=-=-=MethExport	OK
-rw-r--r-- 1 okishinya so-ddmku   257065677 Mar 31 12:31 SRX4725060.cpg.cover.bedGraph.gz
-rw-r--r-- 1 okishinya so-ddmku   245216014 Mar 31 12:31 SRX4725060.cpg.methpipe.tab.gz
-rw-r--r-- 1 okishinya so-ddmku   308422757 Mar 31 12:31 SRX4725060.cpg.methyl.bedGraph.gz
=-=-=bmap_sum	OK
=-=-=hypo- hyper-me-region	OK
-rw-r--r-- 1 okishinya so-ddmku    2458348 Mar 31 13:29 SRX4725060.hmr
-rw-r--r-- 1 okishinya so-ddmku     131631 Mar 31 13:29 SRX4725060.pmd
-rw-r--r-- 1 okishinya so-ddmku    5902561 Mar 31 13:29 SRX4725060.hypermr
=-=-=BigWig	OK
-rw-r--r-- 1 okishinya so-ddmku  308938387 Mar 31 13:37 SRX4725060.cpg.cover.bw
-rw-r--r-- 1 okishinya so-ddmku  305452154 Mar 31 13:33 SRX4725060.cpg.methyl.bw

=-=-=num_reads	436880826
=-=-=mapping_rate_1	0.887
=-=-=mapping_rate_2	0.873
=-=-=methyl_rate_cpg_total	0.762
=-=-=methyl_rate_cpg_lambda	0.004
=-=-=low_methyl_region	99666
=-=-=partial_methyl_region	5111
=-=-=high_methyl_region	242953
=-=-=coverage	15.4077
=-=-=end	210331_13:37:49
=-=-=duration	20.396