Job ID = 12237431
SRX = SRX4725059
Genome = rm6
Started at	210330_17:11:08

sra ファイルのダウンロード中...

Read layout: PAIRED


fastq に変換中...

Read 407151952 spots for SRR7887408/SRR7887408.sra
Written 407151952 spots for SRR7887408/SRR7887408.sra

fastq に変換しました。

-rw-r--r-- 1 okishinya so-ddmku 31187995611 Mar 30 18:06 SRR7887408_1.fastq.gz
-rw-r--r-- 1 okishinya so-ddmku 34096608994 Mar 30 18:06 SRR7887408_2.fastq.gz
Start BMap mapping with following parameters
 species                :R_norvegicus
 revision               :rm6
 seed offset            :0
 seed iterate           :20
 seed step              :5
 min seed hit           :2
 minimum seed length    :20
 maximum seed length    :26
 seed max hit count     :10
 minimum alignment score:150
 output summary file    :SRX4725059.sum.gz
 output alignment file  :SRX4725059.bisulalign

Loading index (FM-index)
    compression factor for suffix array is 2.
    compression factor for counter table is 32.
 -FM-index for c2t genome.... finished (elapsed: 54311 ms)
 -FM-Index for g2a genome.... finished (elapsed: 112075 ms)
 -suffix array for c2t genome.... finished (elapsed: 145283 ms)
 -suffix array for g2a genome.... finished (elapsed: 183398 ms)
 -reference sequence.... finished (elapsed: 188146 ms)
Index loading finished.
File(s) loaded: SRR7887408_1.fastq.gz, SRR7887408_2.fastq.gz.
Time elapsed:44928829 ms
mkdir: cannot create directory ‘/home/okishinya/tmpDirForFastq/SRX4725059’: File exists
=-=-=BMap	OK
-rw-r--r-- 1 okishinya so-ddmku 61239850335 Mar 31 07:52 SRX4725059.bisulalign.gz
-rw-r--r-- 1 okishinya so-ddmku  8186063486 Mar 31 07:52 SRX4725059.sum.gz
SRX4725059.sum.gz was set to analysis list.
Analyzing SRX4725059.sum.gz.
=-=-=MapSum	OK
-rw-r--r-- 1 okishinya so-ddmku        5712 Mar 31 09:34 SRX4725059.mapsum.html
Processing "SRX4725059.bisulalign.gz" (61239850335 bytes)
*********************: finished.
Start exporting ...
Finished.
=-=-=MPTC	OK
-rw-r--r-- 1 okishinya so-ddmku 22961918759 Mar 31 10:03 SRX4725059.graph
=-=-=CalcCoverage	OK
-rw-r--r-- 1 okishinya so-ddmku      580688 Mar 31 10:13 SRX4725059.stat.html
BinSeq                  :/lustre7/home/lustre4/okishinya/chipatlas/bin/Revisions/R_norvegicus/rm6/R_norvegicus_rm6.binseq
GraphFile               :SRX4725059.graph
Output File (methyl)    :SRX4725059.cpg.methyl.bedGraph.gz
Output File (cover)    :SRX4725059.cpg.cover.bedGraph.gz
Output File (tab)    :/dev/null
Output File (methpipe)    :SRX4725059.cpg.methpipe.tab.gz

=-=-=MethExport	OK
-rw-r--r-- 1 okishinya so-ddmku   256173871 Mar 31 10:28 SRX4725059.cpg.cover.bedGraph.gz
-rw-r--r-- 1 okishinya so-ddmku   240522949 Mar 31 10:28 SRX4725059.cpg.methpipe.tab.gz
-rw-r--r-- 1 okishinya so-ddmku   300854072 Mar 31 10:28 SRX4725059.cpg.methyl.bedGraph.gz
=-=-=bmap_sum	OK
=-=-=hypo- hyper-me-region	OK
-rw-r--r-- 1 okishinya so-ddmku    2330038 Mar 31 11:27 SRX4725059.hmr
-rw-r--r-- 1 okishinya so-ddmku     136359 Mar 31 11:27 SRX4725059.pmd
-rw-r--r-- 1 okishinya so-ddmku    5868165 Mar 31 11:27 SRX4725059.hypermr
=-=-=BigWig	OK
-rw-r--r-- 1 okishinya so-ddmku  307573110 Mar 31 11:35 SRX4725059.cpg.cover.bw
-rw-r--r-- 1 okishinya so-ddmku  299783348 Mar 31 11:31 SRX4725059.cpg.methyl.bw

=-=-=num_reads	407151951
=-=-=mapping_rate_1	0.894
=-=-=mapping_rate_2	0.885
=-=-=methyl_rate_cpg_total	0.778
=-=-=methyl_rate_cpg_lambda	0.004
=-=-=low_methyl_region	95064
=-=-=partial_methyl_region	5257
=-=-=high_methyl_region	241364
=-=-=coverage	14.5633
=-=-=end	210331_11:35:40
=-=-=duration	18.408