Job ID = 12237437
SRX = SRX4725052
Genome = rm6
Started at	210330_17:23:51

sra ファイルのダウンロード中...

Read layout: PAIRED


fastq に変換中...

Read 568719674 spots for SRR7887401/SRR7887401.sra
Written 568719674 spots for SRR7887401/SRR7887401.sra

fastq に変換しました。

-rw-r--r-- 1 okishinya so-ddmku 41488067192 Mar 30 18:38 SRR7887401_1.fastq.gz
-rw-r--r-- 1 okishinya so-ddmku 44411524243 Mar 30 18:38 SRR7887401_2.fastq.gz
Start BMap mapping with following parameters
 species                :R_norvegicus
 revision               :rm6
 seed offset            :0
 seed iterate           :20
 seed step              :5
 min seed hit           :2
 minimum seed length    :20
 maximum seed length    :26
 seed max hit count     :10
 minimum alignment score:150
 output summary file    :SRX4725052.sum.gz
 output alignment file  :SRX4725052.bisulalign

Loading index (FM-index)
    compression factor for suffix array is 2.
    compression factor for counter table is 32.
 -FM-index for c2t genome.... finished (elapsed: 52538 ms)
 -FM-Index for g2a genome.... finished (elapsed: 107142 ms)
 -suffix array for c2t genome.... finished (elapsed: 117495 ms)
 -suffix array for g2a genome.... finished (elapsed: 127534 ms)
 -reference sequence.... finished (elapsed: 127950 ms)
Index loading finished.
File(s) loaded: SRR7887401_1.fastq.gz, SRR7887401_2.fastq.gz.
Time elapsed:53931449 ms
=-=-=BMap	OK
-rw-r--r-- 1 okishinya so-ddmku 80297484980 Mar 31 11:15 SRX4725052.bisulalign.gz
-rw-r--r-- 1 okishinya so-ddmku 11256094839 Mar 31 11:15 SRX4725052.sum.gz
SRX4725052.sum.gz was set to analysis list.
Analyzing SRX4725052.sum.gz.
=-=-=MapSum	OK
-rw-r--r-- 1 okishinya so-ddmku        6156 Mar 31 13:29 SRX4725052.mapsum.html
Processing "SRX4725052.bisulalign.gz" (80297484980 bytes)
*************: finished.
Start exporting ...
Finished.
=-=-=MPTC	OK
-rw-r--r-- 1 okishinya so-ddmku 22961918759 Mar 31 14:10 SRX4725052.graph
=-=-=CalcCoverage	OK
-rw-r--r-- 1 okishinya so-ddmku      588793 Mar 31 14:21 SRX4725052.stat.html
BinSeq                  :/lustre7/home/lustre4/okishinya/chipatlas/bin/Revisions/R_norvegicus/rm6/R_norvegicus_rm6.binseq
GraphFile               :SRX4725052.graph
Output File (methyl)    :SRX4725052.cpg.methyl.bedGraph.gz
Output File (cover)    :SRX4725052.cpg.cover.bedGraph.gz
Output File (tab)    :/dev/null
Output File (methpipe)    :SRX4725052.cpg.methpipe.tab.gz

=-=-=MethExport	OK
-rw-r--r-- 1 okishinya so-ddmku   261790933 Mar 31 14:35 SRX4725052.cpg.cover.bedGraph.gz
-rw-r--r-- 1 okishinya so-ddmku   256382489 Mar 31 14:35 SRX4725052.cpg.methpipe.tab.gz
-rw-r--r-- 1 okishinya so-ddmku   315229416 Mar 31 14:35 SRX4725052.cpg.methyl.bedGraph.gz
=-=-=bmap_sum	OK
=-=-=hypo- hyper-me-region	OK
-rw-r--r-- 1 okishinya so-ddmku    2373138 Mar 31 15:32 SRX4725052.hmr
-rw-r--r-- 1 okishinya so-ddmku     132594 Mar 31 15:32 SRX4725052.pmd
-rw-r--r-- 1 okishinya so-ddmku    5956588 Mar 31 15:32 SRX4725052.hypermr
=-=-=BigWig	OK
-rw-r--r-- 1 okishinya so-ddmku  314855735 Mar 31 15:40 SRX4725052.cpg.cover.bw
-rw-r--r-- 1 okishinya so-ddmku  315487636 Mar 31 15:36 SRX4725052.cpg.methyl.bw

=-=-=num_reads	568719671
=-=-=mapping_rate_1	0.885
=-=-=mapping_rate_2	0.876
=-=-=methyl_rate_cpg_total	0.778
=-=-=methyl_rate_cpg_lambda	0.004
=-=-=low_methyl_region	96602
=-=-=partial_methyl_region	5110
=-=-=high_methyl_region	245015
=-=-=coverage	19.7375
=-=-=end	210331_15:40:33
=-=-=duration	22.278