Job ID = 12237433
SRX = SRX4725051
Genome = rm6
Started at	210330_17:15:02

sra ファイルのダウンロード中...

Read layout: PAIRED


fastq に変換中...

Read 505236240 spots for SRR7887400/SRR7887400.sra
Written 505236240 spots for SRR7887400/SRR7887400.sra

fastq に変換しました。

-rw-r--r-- 1 okishinya so-ddmku 37558067730 Mar 30 18:23 SRR7887400_1.fastq.gz
-rw-r--r-- 1 okishinya so-ddmku 40961782673 Mar 30 18:23 SRR7887400_2.fastq.gz
Start BMap mapping with following parameters
 species                :R_norvegicus
 revision               :rm6
 seed offset            :0
 seed iterate           :20
 seed step              :5
 min seed hit           :2
 minimum seed length    :20
 maximum seed length    :26
 seed max hit count     :10
 minimum alignment score:150
 output summary file    :SRX4725051.sum.gz
 output alignment file  :SRX4725051.bisulalign

Loading index (FM-index)
    compression factor for suffix array is 2.
    compression factor for counter table is 32.
 -FM-index for c2t genome.... finished (elapsed: 53949 ms)
 -FM-Index for g2a genome.... finished (elapsed: 110420 ms)
 -suffix array for c2t genome.... finished (elapsed: 140085 ms)
 -suffix array for g2a genome.... finished (elapsed: 169454 ms)
 -reference sequence.... finished (elapsed: 170541 ms)
Index loading finished.
File(s) loaded: SRR7887400_1.fastq.gz, SRR7887400_2.fastq.gz.
Time elapsed:45542948 ms
=-=-=BMap	OK
-rw-r--r-- 1 okishinya so-ddmku 68863305939 Mar 31 08:30 SRX4725051.bisulalign.gz
-rw-r--r-- 1 okishinya so-ddmku  9976101569 Mar 31 08:30 SRX4725051.sum.gz
SRX4725051.sum.gz was set to analysis list.
Analyzing SRX4725051.sum.gz.
=-=-=MapSum	OK
-rw-r--r-- 1 okishinya so-ddmku        5924 Mar 31 10:24 SRX4725051.mapsum.html
Processing "SRX4725051.bisulalign.gz" (68863305939 bytes)
************************************: finished.
Start exporting ...
Finished.
=-=-=MPTC	OK
-rw-r--r-- 1 okishinya so-ddmku 22961918759 Mar 31 10:59 SRX4725051.graph
=-=-=CalcCoverage	OK
-rw-r--r-- 1 okishinya so-ddmku      582716 Mar 31 11:10 SRX4725051.stat.html
BinSeq                  :/lustre7/home/lustre4/okishinya/chipatlas/bin/Revisions/R_norvegicus/rm6/R_norvegicus_rm6.binseq
GraphFile               :SRX4725051.graph
Output File (methyl)    :SRX4725051.cpg.methyl.bedGraph.gz
Output File (cover)    :SRX4725051.cpg.cover.bedGraph.gz
Output File (tab)    :/dev/null
Output File (methpipe)    :SRX4725051.cpg.methpipe.tab.gz

=-=-=MethExport	OK
-rw-r--r-- 1 okishinya so-ddmku   256607124 Mar 31 11:25 SRX4725051.cpg.cover.bedGraph.gz
-rw-r--r-- 1 okishinya so-ddmku   247520604 Mar 31 11:25 SRX4725051.cpg.methpipe.tab.gz
-rw-r--r-- 1 okishinya so-ddmku   306185760 Mar 31 11:25 SRX4725051.cpg.methyl.bedGraph.gz
=-=-=bmap_sum	OK
=-=-=hypo- hyper-me-region	OK
-rw-r--r-- 1 okishinya so-ddmku    2529992 Mar 31 12:24 SRX4725051.hmr
-rw-r--r-- 1 okishinya so-ddmku     127720 Mar 31 12:24 SRX4725051.pmd
-rw-r--r-- 1 okishinya so-ddmku    6005475 Mar 31 12:24 SRX4725051.hypermr
=-=-=BigWig	OK
-rw-r--r-- 1 okishinya so-ddmku  310338807 Mar 31 12:31 SRX4725051.cpg.cover.bw
-rw-r--r-- 1 okishinya so-ddmku  301395449 Mar 31 12:27 SRX4725051.cpg.methyl.bw

=-=-=num_reads	505236238
=-=-=mapping_rate_1	0.886
=-=-=mapping_rate_2	0.872
=-=-=methyl_rate_cpg_total	0.767
=-=-=methyl_rate_cpg_lambda	0.004
=-=-=low_methyl_region	102726
=-=-=partial_methyl_region	5008
=-=-=high_methyl_region	247467
=-=-=coverage	17.7474
=-=-=end	210331_12:32:10
=-=-=duration	19.285