Job ID = 12237439
SRX = SRX4724200
Genome = rm6
Started at	210330_17:28:21

sra ファイルのダウンロード中...

Read layout: PAIRED


fastq に変換中...

Read 706924628 spots for SRR7887399/SRR7887399.sra
Written 706924628 spots for SRR7887399/SRR7887399.sra

fastq に変換しました。

-rw-r--r-- 1 okishinya so-ddmku 42569776095 Mar 30 19:14 SRR7887399_1.fastq.gz
-rw-r--r-- 1 okishinya so-ddmku 49699781137 Mar 30 19:14 SRR7887399_2.fastq.gz
Start BMap mapping with following parameters
 species                :R_norvegicus
 revision               :rm6
 seed offset            :0
 seed iterate           :20
 seed step              :5
 min seed hit           :2
 minimum seed length    :20
 maximum seed length    :26
 seed max hit count     :10
 minimum alignment score:150
 output summary file    :SRX4724200.sum.gz
 output alignment file  :SRX4724200.bisulalign

Loading index (FM-index)
    compression factor for suffix array is 2.
    compression factor for counter table is 32.
 -FM-index for c2t genome.... finished (elapsed: 37856 ms)
 -FM-Index for g2a genome.... finished (elapsed: 76215 ms)
 -suffix array for c2t genome.... finished (elapsed: 105405 ms)
 -suffix array for g2a genome.... finished (elapsed: 136555 ms)
 -reference sequence.... finished (elapsed: 139889 ms)
Index loading finished.
File(s) loaded: SRR7887399_1.fastq.gz, SRR7887399_2.fastq.gz.
Time elapsed:13169109 ms
=-=-=BMap	OK
-rw-r--r-- 1 okishinya so-ddmku 105229270853 Apr  1 00:42 SRX4724200.bisulalign.gz
-rw-r--r-- 1 okishinya so-ddmku  13855794819 Apr  1 00:42 SRX4724200.sum.gz
SRX4724200.sum.gz was set to analysis list.
Analyzing SRX4724200.sum.gz.
=-=-=MapSum	OK
-rw-r--r-- 1 okishinya so-ddmku         6318 Apr  1 03:49 SRX4724200.mapsum.html
Processing "SRX4724200.bisulalign.gz" (105229270853 bytes)
*****************************************: finished.
Start exporting ...
Finished.
=-=-=MPTC	OK
-rw-r--r-- 1 okishinya so-ddmku  22961918759 Apr  1 05:07 SRX4724200.graph
=-=-=CalcCoverage	OK
-rw-r--r-- 1 okishinya so-ddmku      594473 Apr  1 05:21 SRX4724200.stat.html
BinSeq                  :/lustre7/home/lustre4/okishinya/chipatlas/bin/Revisions/R_norvegicus/rm6/R_norvegicus_rm6.binseq
GraphFile               :SRX4724200.graph
Output File (methyl)    :SRX4724200.cpg.methyl.bedGraph.gz
Output File (cover)    :SRX4724200.cpg.cover.bedGraph.gz
Output File (tab)    :/dev/null
Output File (methpipe)    :SRX4724200.cpg.methpipe.tab.gz

=-=-=MethExport	OK
-rw-r--r-- 1 okishinya so-ddmku   266322391 Apr  1 05:38 SRX4724200.cpg.cover.bedGraph.gz
-rw-r--r-- 1 okishinya so-ddmku   263978244 Apr  1 05:38 SRX4724200.cpg.methpipe.tab.gz
-rw-r--r-- 1 okishinya so-ddmku   332090157 Apr  1 05:38 SRX4724200.cpg.methyl.bedGraph.gz
=-=-=bmap_sum	OK
=-=-=hypo- hyper-me-region	OK
-rw-r--r-- 1 okishinya so-ddmku    2356112 Apr  1 06:43 SRX4724200.hmr
-rw-r--r-- 1 okishinya so-ddmku     158484 Apr  1 06:43 SRX4724200.pmd
-rw-r--r-- 1 okishinya so-ddmku    5552800 Apr  1 06:43 SRX4724200.hypermr
=-=-=BigWig	OK
-rw-r--r-- 1 okishinya so-ddmku  313081957 Apr  1 06:52 SRX4724200.cpg.cover.bw
-rw-r--r-- 1 okishinya so-ddmku  329085776 Apr  1 06:47 SRX4724200.cpg.methyl.bw

=-=-=num_reads	706924625
=-=-=mapping_rate_1	0.882
=-=-=mapping_rate_2	0.866
=-=-=methyl_rate_cpg_total	0.705
=-=-=methyl_rate_cpg_lambda	0.004
=-=-=low_methyl_region	96645
=-=-=partial_methyl_region	6181
=-=-=high_methyl_region	229222
=-=-=coverage	19.3953
=-=-=end	210401_06:53:01
=-=-=duration	37.411