Job ID = 12237396
SRX = SRX4576091
Genome = rm6
Started at	210330_15:50:29

sra ファイルのダウンロード中...

Read layout: PAIRED


fastq に変換中...

Rejected 84174623 READS because READLEN < 1
Read 84174623 spots for SRR7719183/SRR7719183.sra
Written 84174623 spots for SRR7719183/SRR7719183.sra
ls: cannot access *1.fastq: No such file or directory

fastq に変換しました。

-rw-r--r-- 1 okishinya so-ddmku 5953698534 Mar 30 15:57 SRR7719183_2.fastq.gz
Start BMap mapping with following parameters
 species                :R_norvegicus
 revision               :rm6
 seed offset            :0
 seed iterate           :20
 seed step              :5
 min seed hit           :2
 minimum seed length    :20
 maximum seed length    :26
 seed max hit count     :10
 minimum alignment score:150
 output summary file    :SRX4576091.sum.gz
 output alignment file  :SRX4576091.bisulalign

Loading index (FM-index)
    compression factor for suffix array is 2.
    compression factor for counter table is 32.
 -FM-index for c2t genome.... finished (elapsed: 54242 ms)
 -FM-Index for g2a genome.... finished (elapsed: 110084 ms)
 -suffix array for c2t genome.... finished (elapsed: 122125 ms)
 -suffix array for g2a genome.... finished (elapsed: 133810 ms)
 -reference sequence.... finished (elapsed: 134144 ms)
Index loading finished.
File(s) loaded: SRR7719183_1.fastq.gz, SRR7719183_2.fastq.gz.
Couldn't open file " "SRR7719183_1.fastq.gz" ". 
Time elapsed:135971 ms
mkdir: cannot create directory ‘/home/okishinya/tmpDirForFastq/SRX4576091’: File exists
pigz: skipping: SRX4576091.bisulalign does not exist
=-=-=BMap	Bad